2022
44. “Revising the taxonomy of Darevskia valentini (Boettger, 1892) and Darevskia rudis (Bedriaga, 1886) (Squamata, Lacertidae): a Morpho-Phylogenetic integrated study in a complex Anatolian scenario” Oscar Arribas, Kamil Candan, Panagiotis Kornilios, Dinçer Ayaz, Yusuf Kumlutaş, Serkan Gül, Can Yilmaz, Elif Yildirim Caynak, Çetin Ilgaz (2022). Zootaxa. https://doi.org/10.11646/zootaxa.5224.1.1
43. “Growth parameters of the invasive blue swimming crab Portunus segnis (Forskål, 1775) (Crustacea) in the North-Eastern Mediterranean, Türkiye. Canan Türeli, Irem Nur Yesilyurt, Sedat Gündoğdu (2022). Aquatic Research. https://doi.org/10.3153/AR22028
42. “Çilek üretiminde plastik malç uygulamasından kaynaklı toprakta plastik birikiminin belirlenmesi” Muhittin Onur Akça, Sedat Gündoğdu, Oguz Can Turgay (2022). Toprak Bilimi ve Bitki Besleme Dergisi. https://doi.org/10.33409/tbbbd.1185820
41. “Somatic copy number variant load in neurons of healthy controls and Alzheimer’s disease patients” Zeliha Gözde Turan, Vincent Richter, Jana Bochmann, Poorya Parvizi, Etka Yapar, Ulas Işıldak, Sarah-Kristin Waterholter, Sabrina Leclere-Turbant, Çağdaş Devrim Son, Charles Duyckaerts, İdil Yet, Thomas Arendt, Mehmet Somel & Uwe Ueberham (2022). Acta Neuropathologica Communications. https://doi.org/10.33409/tbbbd.1185820
40. “Evolution and ontogeny of bacteriocytes in insects” Mauricio E. Alarcón, Priscila G. Polo, Sevim Nur Akyüz and Matteen Rafiqi. (2022). Front. Physiol. Sec. Invertebrate Physiology https://doi.org/10.3389/fphys.2022.1034066
39. “HMMploidy: inference of ploidy levels from short-read sequencing data” Soraggi, Samuele; Rhodes, Johanna; Altinkaya, Isin, Tarrant, Oliver; Balloux, Francois; Fisher, Matthew C; Fumagalli, Matteo (2022). Peer Community Journal. https://doi.org/10.24072/pcjournal.178
38. “Fast and accurate estimation of multidimensional site frequency spectra from low-coverage high-throughput sequencing data” Alex Mas-Sandoval, Nathaniel S Pope, Knud Nor Nielsen, Isin Altinkaya, Matteo Fumagalli, Thorfinn Sand Korneliussen Author Notes (2022). GigaScience https://doi.org/10.1093/gigascience/giac032
37. “LotuS2: an ultrafast and highly accurate tool for amplicon sequencing analysis” Ezgi Özkurt, Joachim Fritscher, Nicola Soranzo, Duncan Y. K. Ng, Robert P. Davey, Mohammad Bahram & Falk Hildebrand (2022). Microbiome. https://doi.org/10.1186/s40168-022-01365-1
36. “Experimental assessment of salinization effects on freshwater zooplankton communities and their trophic interactions under eutrophic conditions” Zeynep Ersoy, Meritxell Abril, Miguel Cañedo-Argüelles, Carmen Espinosa, Lidia Vendrell-Puigmitja, Lorenzo Proia (2022). Environmental Pollution. https://doi.org/10.1016/j.envpol.2022.120127
35. “Shared 6mer Peptides of Human and Omicron (21K and 21L) at SARS-CoV-2 Mutation Sites” Yekbun Adiguzel and Yehuda Shoenfeld (2022). Antibodies. https://doi.org/10.3390/antib11040068
34. “Editorial: Alternatives to petroleum-based plastics as a potential solution to the global plastic pollution crisis in marine environments: Do they provide sustainable solutions?” Sedat Gündoğdu, Tony R. Walker, Bethanie Carney Almroth, Scott Coffin and Claire Gwinnett (2022). Front. Mar. Sci. https://doi.org/10.3389/fmars.2022.1066113
33. “Trade-Offs Between Hepatic Host Defense and Metabolic Programs Underlie Sex-Biased Diseases” Joni Nikkanen, Yew Ann Leong, William C. Krause, Denis Dermadi, J. Alan Maschek, Tyler Van Ry, James E. Cox, Ethan J. Weiss, Omer Gokcumen, Ajay Chawla, Holly A. Ingraham (2022). bioRxiv. https://www.biorxiv.org/content/10.1101/2022.01.07.475423v1.abstract
32. “Balancing selection on genomic deletion polymorphisms in humans” Alber Aqil, Leo Speidel, Pavlos Pavlidis, Omer Gokcumen (2022). bioRxiv. https://www.biorxiv.org/content/10.1101/2022.04.28.489864v1.abstract
31. “Genomic evidence for ancient migration routes along South America’s Atlantic coast” Andre Luiz Campelo dos Santos, Amanda Owings, Henry Socrates Lavalle Sullasi, Omer Gokcumen, Michael DeGiorgio, John Lindo (2022). bioRxiv. https://www.biorxiv.org/content/10.1101/2022.06.27.497820v2.abstract
30. “Similarity-Based Analysis of Allele Frequency Distribution among Multiple Populations Identifies Adaptive Genomic Structural Variants” Marie Saitou, Naoki Masuda, Omer Gokcumen (2022). Molecular Biology and Evolution. https://academic.oup.com/mbe/article/39/3/msab313/6413645
29. “A mechanism of gene evolution generating mucin function” Petar Pajic , Shichen Shen , Jun Qu, Alison J May, Sarah Knox, Stefan Ruhl, Omer Gokcumen (2022). Sci Adv. https://www.science.org/doi/full/10.1126/sciadv.abm8757
28. “Widespread variation in salt tolerance within freshwater zooplankton species reduces the predictability of community-level salt tolerance” Shelley E. Arnott, Vincent Fugère, Celia C. Symons, Stephanie J. Melles, Beatrix E. Beisner, Miguel Cañedo-Argüelles, Marie-Pier Hébert, Jennifer A. Brentrup, Amy L. Downing, Derek K. Gray, Danielle Greco, William D. Hintz, Alexandra McClymont, Rick A. Relyea, James A. Rusak, Catherine L. Searle, Louis Astorg, Henry K. Baker, Zeynep Ersoy, Carmen Espinosa, Jaclyn M. Franceschini, Angelina T. Giorgio, Norman Göbeler, Emily Hassal, Mercedes Huynh, Samuel Hylander, Kacie L. Jonasen, Andrea Kirkwood, Silke Langenheder, Ola Langvall, Hjalmar Laudon, Lovisa Lind, Maria Lundgren, Emma R. Moffett, Lorenzo Proia, Matthew S. Schuler, Jonathan B. Shurin, Christopher F. Steiner, Maren Striebel, Simon Thibodeau, Pablo Urrutia Cordero, Lidia Vendrell-Puigmitja, Gesa A. Weyhenmeyer, Alison M. Derry (2022). Limnology and Oceanography Letters. https://doi.org/10.1002/lol2.10277
27. “Plastics derived from disposable greenhouse plastic films and irrigation pipes in agricultural soils: a case study from Turkey” Rezan Gündoğdu, Derya Önder, Sedat Gündoğdu & Claire Gwinnett (2022). Environmental Science and Pollution Research https://doi.org/10.1002/lol2.10277
26. “Mapping the sex determination region in the Salix F1 hybrid common parent population confirms a ZW system in six diverse species” Dustin G Wilkerson, Bircan Taskiran, Craig H Carlson, Lawrence B Smart (2022). G3 Genes|Genomes|Genetics https://doi.org/10.1093/g3journal/jkac071
25. “Developmental Integration of Endosymbionts in Insects” Ab. Matteen Rafiqi, Priscila G. Polo, Nihan Sultan Milat, Zelal Özgür Durmuş, Birgül Çolak-Al, Mauricio E. Alarcón, Fatma Zehra Çağıl and Arjuna Rajakumar (2022). Front. Ecol. Evol. https://doi.org/10.3389/fevo.2022.846586
24. “Assessment of genetic variation of natural populations of wild cherry (Prunus avium L.)via SSR markers” Burcu Uzan Eken, Emrah Kirdök, Ercan Velioğlu, Yelda Özden Çiftçi (2022). Turkish Journal of Botany https://doi.org/10.3906/bot-2111-16
23. “Bioarchaeological evidence of one of the earliest Islamic burials in the Levant” Megha Srigyan, Héctor Bolívar, Irene Ureña, Jonathan Santana, Andrew Petersen, Eneko Iriarte, Emrah Kırdök, Nora Bergfeldt, Alice Mora, Mattias Jakobsson, Khaled Abdo, Frank Braemer, Colin Smith, Juan José Ibañez, Anders Götherström, Torsten Günther & Cristina Valdiosera (2022). Communications Biology https://doi.org/10.1038/s42003-022-03508-4
22. “piRNA-like small RNAs target transposable elements in a Clade IV parasitic nematode” Mona Suleiman, Asuka Kounosu, Ben Murcott, Mehmet Dayi, Rebecca Pawluk, Akemi Yoshida, Mark Viney, Taisei Kikuchi & Vicky L. Hunt (2022). Scientific Reports. https://doi.org/10.1038/s41598-022-14247-1
21. “Quantifying an online wildlife trade using a web crawler” Susanne Masters, Bastien Anthoons, Panagiotis Madesis, Seethapathy G. Saroja, Maarten Schermer, Wilfred Gerritsen, Arzu Karahan, Rick Verdoes, Rachel Schwallier, Tinde van Andel, Hugo de Boer & Barbara Gravendeel (2022). Biodiversity and Conservation https://doi.org/10.1007/s10531-022-02367-z
20. “Studying Tunicata WBR Using Botrylloides anceps” Arzu Karahan, Esra Öztürk, Berivan Temiz & Simon Blanchoud (2022). Part of the Methods in Molecular Biology https://link.springer.com/protocol/10.1007/978-1-0716-2172-1_16
19. “Lake salinization drives consistent losses of zooplankton abundance and diversity across coordinated mesocosm experiments” Marie-Pier Hébert, Celia C. Symons, Miguel Cañedo-Argüelles, Shelley E. Arnott, Alison M. Derry, Vincent Fugère, William D. Hintz, Stephanie J. Melles, Louis Astorg, Henry K. Baker, Jennifer A. Brentrup, Amy L. Downing, Zeynep Ersoy, Carmen Espinosa, Jaclyn M. Franceschini, Angelina T. Giorgio, Norman Göbeler, Derek K. Gray, Danielle Greco, Emily Hassal, Mercedes Huynh, Samuel Hylander, Kacie L. Jonasen, Andrea Kirkwood, Silke Langenheder, Ola Langvall, Hjalmar Laudon, Lovisa Lind, Maria Lundgren, Alexandra McClymont, Lorenzo Proia, Rick A. Relyea, James A. Rusak, Matthew S. Schuler, Catherine L. Searle, Jonathan B. Shurin, Christopher F. Steiner, Maren Striebel, Simon Thibodeau, Pablo Urrutia Cordero, Lidia Vendrell-Puigmitja, Gesa A. Weyhenmeyer, Beatrix E. Beisner (2022). Limnology and Oceanography Letters https://doi.org/10.1002/lol2.10239
18. “Current water quality guidelines across North America and Europe do not protect lakes from salinization” William D. Hintz, Shelley E. Arnott, Celia C., Danielle A. Greco, Alexandra McClymont, Jennifer A. Brentrup, Miguel Cañedo-Argüelles, Alison M. Derry, Amy L. Downing, Derek K. Gray, Stephanie J. Melles, Rick A. Relyea, James A. Rusak, Catherine L. Searle, Louis Astorg, Henry K. Baker, Beatrix E. Beisner, Kathryn L. Cottingham, Zeynep Ersoy, Carmen Espinosa, Jaclyn Franceschini, Angelina T. Giorgio, Norman Göbeler, Emily Hassal, Marie-Pier Hébert, Mercedes Huynh, Samuel Hylander, Kacie L. Jonasen, Andrea E. Kirkwood, Silke Langenheder, Ola Langvall, Hjalmar Laudon, Lovisa, Maria Lundgren, Lorenzo Proia, Matthew S. Schuler, Jonathan B. Shurin, Christopher F. Steiner, Maren Striebel, Simon Thibodeau, Pablo Urrutia-Cordero, Lidia Vendrell-Puigmitja, and Gesa A. Weyhenmeyer (2022). Proceedings of the National Academy of Sciences https://doi.org/10.1073/pnas.2115033119
17. “Possible stochastic sex determination in Bursaphelenchus nematodes” Ryoji Shinya, Simo Sun, Mehmet Dayi, Isheng Jason Tsai, Atsushi Miyama, Anthony Fu Chen, Koichi Hasegawa, Igor Antoshechkin, Taisei Kikuchi & Paul W. Sternberg (2022). nature communications. https://doi.org/10.1038/s41467-022-30173-2
16. “Occurrence of Microplastics in Herpetological Museum Collection: Grass Snake (Natrix natrix [Linnaeus, 1758]) and Dice Snake (Natrix tessellata [Laurenti, 1769]) as Model Organisms” Serkan Gül, Kaan Karaoğlu, Zehra Özçifçi, Kamil Candan, Çetin Ilgaz & Yusuf Kumlutaş (2022). Water, Air, & Soil Pollution. https://doi.org/10.1007/s11270-022-05626-5
15. “A global plastic treaty must cap production” Melanie Bergmann, Bethanie Carney Almroth, Susanne M. Brander, Tridibesh Dey, Dannielle S. Green, Sedat Gundogdu, Anja Krieger, Martin Wagner, Tony R. Walker (2022). Science. https://www.science.org/doi/full/10.1126/science.abq0082
14. “Potential habitats of an alien species (Asterias rubens Linnaeus, 1758) in the Black Sea: its current and future distribution patterns” Yusuf Ceylan & Serkan Gül (2022). Environmental Science and Pollution Research. https://doi.org/10.1007/s11356-021-17171-5
13. “Sexual size and shape dimorphism in Turkish common toads (Bufo bufo Linnaeus 1758)” Cantekin Dursun, Serkan Gül, Nurhayat Özdemir (2022). Anat Rec (Hoboken) https://doi.org/10.1002/ar.24801
12. “Excessive replacement changes drive evolution of global sheep prion protein (PRNP) sequences” Efe Sezgin, Eden Yitna Teferedegn, Cemal Ün & Yalçın Yaman (2022). Heredity http://dx.doi.org/10.1038/s41437-022-00520-6
11. “Chapter 11 – Plastic pollution in marine and freshwater environments: abundance, sources, and mitigation” Florin-Constantin Mihai, Sedat Gündoğdu, Farhan R. Khan, Arianna Olivelli, Laura A. Markley, Tim van Emmerik (2022). Emerging Contaminants in the Environment. https://doi.org/10.1016/B978-0-323-85160-2.00016-0
10. “Modeling the Fate and Transport of Microplastics in Coastal Areas” Berna Ayat, Burak Aydoğan & Sedat Gündoğdu (2022). Microplastic Pollution. https://link.springer.com/chapter/10.1007/978-3-030-89220-3_12
9. “Occurrence of Microplastic Pollution in Coastal Areas” Cem Çevik & Sedat Gündoğdu (2022). Microplastic Pollution. https://link.springer.com/chapter/10.1007/978-3-030-89220-3_11
8. “Polymer Types of Microplastic in Coastal Areas” Sedat Gündoğdu (2022). Microplastic Pollution. https://link.springer.com/chapter/10.1007/978-3-030-89220-3_4
7. “The impact of nano/micro-plastics toxicity on seafood quality and human health: facts and gaps” Sedat Gündogdu , Nikheel Rathod , Abdo Hassoun, Ewelina Jamroz, Piotr Kulawik, Cengiz Gokbulut, Abderrahmane Aït-Kaddour, Fatih Özogul (2022). Critical Reviews in Food Science and Nutrition. https://doi.org/10.1080/10408398.2022.2033684
6. “Metal levels of processed ready-to-eat stuffed mussels sold in Turkey: Health risk estimation” Ali Rıza Köşker, Sedat Gündoğdu, Deniz Ayas, Mısra Bakan (2022). Journal of Food Composition and Analysis. https://doi.org/10.1016/j.jfca.2021.104326
5. “Hydrometeorological assessments of the transport of microplastic pellets in the Eastern Mediterranean” Sedat Gündoğdu , Berna Ayat , Burak Aydoğan , Cem Çevik , Serkan Karaca (2022). Science of The Total Environment https://doi.org/10.1016/j.scitotenv.2022.153676
4. “Seminal fluid gene expression and reproductive fitness in Drosophila melanogaster” Bahar Patlar & Alberto Civetta (2022). BMC Ecology and Evolution. https://doi.org/10.1186/s12862-022-01975-1
3. “Turkish postfire action overlooks biodiversity” Çağatay Tavşanoğlu, Juli G. Pausas (2022). Science. https://doi.org/10.1126/science.abn5645
2. “Recovery of a plant community in the central Anatolian steppe after small-scale disturbances” Özlem Özüdoğru, Barış Özüdoğru & Çağatay Tavşanoğlu (2022). Folia Geobotanica https://doi.org/10.1007/s12224-021-09404-9
1. “Diversity and regeneration strategies in woody plant communities of the Mediterranean Basin: Vegetation type matters” İrem Tüfekcioğlu & Çağatay Tavşanoğlu (2022). Plant Biosystems – An International Journal Dealing with all Aspects of Plant Biology. https://doi.org/10.1080/11263504.2022.2036845
2021
57. “Threat Ranking to Improve Conservation Planning: An Example from the Gediz Delta, Turkey” Dilara Arslan ,Kerim Çiçek ,Ömer Döndüren and Lisa Ernoul (2021). Land. http://dx.doi.org/10.3390/land10121381
56. “Genetic diversity assessments of brown rot pathogen Monilinia fructicola based on the six simple sequence repeat loci” Hakan Guven, Sydney E. Everhart, Rita Milvia De Miccolis Angelini & Hilal Ozkilinc (2021). Journal of Plant Diseases and Protection. https://doi.org/10.1007/s41348-021-00504-4
55. “A novel approach for in vitro fungicide screening and the sensitivity of Monilinia populations from peach orchards in Turkey to respiratory inhibitor fungicides” Muhammed R. Durak a, Kubra Arslan a, Ece Silan b, Gozde Yildiz b, Hilal Ozkilinc (2021). Crop Protection. https://doi.org/10.1016/j.cropro.2021.105688
54. “The Nereid on the rise: Platynereis as a model system” B. Duygu Özpolat, Nadine Randel, Elizabeth A. Williams, Luis Alberto Bezares-Calderón, Gabriele Andreatta, Guillaume Balavoine, Paola Y. Bertucci, David E. K. Ferrier, Maria Cristina Gambi, Eve Gazave, Mette Handberg-Thorsager, Jörg Hardege, Cameron Hird, Yu-Wen Hsieh, Jerome Hui, Kevin Nzumbi Mutemi, Stephan Q. Schneider, Oleg Simakov, Hernando M. Vergara, Michel Vervoort, Gáspár Jékely, Kristin Tessmar-Raible, Florian Raible & Detlev Arendt (2021). EvoDevo https://evodevojournal.biomedcentral.com/articles/10.1186/s13227-021-00180-3
53. “Honey Bee Diversity Is Swayed by Migratory Beekeeping and Trade Despite Conservation Practices: Genetic Evidence for the Impact of Anthropogenic Factors on Population Structure” Mert Kükrer, Meral Kence and Aykut Kence (2021). Front. Ecol. Evol. https://doi.org/10.3389/fevo.2021.556816
52. “An Overview of Historical Distribution Patterns of Chalcides ocellatus (Forsskål, 1775) Using Ecological Niche Modelling: the Taurus Mountains as a Refugium” Kamil Candan, Çetin Ilgaz, Yusuf Kumlutaş, Serkan Gül (2021). Russian Journal of Herpetology. https://doi.org/10.30906/1026-2296-2021-28-6-319-326
51. “Information-theoretic approach in allometric scaling relations of DNA and proteins” Yekbun Adiguzel (2021). Chemical Biology & Drug Design. https://doi.org/10.1111/cbdd.13988
50. “Morphometric relationships and their contribution to biomass and cannabinoid yield in hybrids of hemp (Cannabis sativa)” Craig H Carlson, George M Stack, Yu Jiang, Bircan Taşkıran, Ali R Cala, Jacob A Toth, Glenn Philippe, Jocelyn K C Rose, Christine D Smart, Lawrence B Smart. (2021). Journal of Experimental Botany. https://doi.org/10.1093/jxb/erab346
49. “Spatial separation of ribosomes and DNA in Asgard archaeal cells” Burak Avcı, Jakob Brandt, Dikla Nachmias, Natalie Elia, Mads Albertsen, Thijs J. G. Ettema, Andreas Schramm & Kasper Urup Kjeldsen (2021). The ISME Journal. https://www.nature.com/articles/s41396-021-01098-3
48. “Plastic Pollution, Waste Management Issues, and Circular Economy Opportunities in Rural Communities” Florin-Constantin Mihai, Sedat Gündoğdu, Laura A. Markley, Arianna Olivelli, Farhan R. Khan, Claire Gwinnet, Jutta Gutberlet, Natalia Reyna-Bensusan, Paula Llanquileo-Melgarejo, Christia Meidiana ,Sherien Elagroudy ,Vitalii Ishchenko ,Simon Penney ,Zoe Lenkiewicz and Maria Molinos-Senante (2021). Sustainability. https://doi.org/10.3390/su14010020
47. “A review of plastic pollution in aquatic ecosystems of Turkey” Cem Çevik, Ahmet Erkan Kıdeyş, Ülkü Nihan Tavşanoğlu, Gökben Başaran Kankılıç & Sedat Gündoğdu (2021). Environmental Science and Pollution Research. https://link.springer.com/article/10.1007/s11356-021-17648-3
46. “Cryptic genetic structure within Valentin’s Lizard, Darevskia valentini (Boettger, 1892) (Squamata, Lacertidae), with implications for systematics and origins of parthenogenesis” K. Candan, P. Kornilios, D. Ayaz, Y. Kumlutaş, Serkan Gül, Elif Yildirim Caynak, Ç. Ilgaz. (2021). Systematics and Biodiversity https://doi.org/10.1080/14772000.2021.1909171
45. “Genomics, Phenomics, and Next Breeding Tools for Genetic Improvement of Safflower (Carthamus tinctorius L.)” Abdurrahim Yılmaz, Mehmet Zahit Yeken, Fawad Ali, Muzaffer Barut, Muhammad Azhar Nadeem, Hilal Yılmaz, Muhammad Naeem, Burcu Tarıkahya Hacıoğlu, Yusuf Arslan, Cemal Kurt, Muhammad Aasim & Faheem Shehzad Baloch(2021). Oil Crop Genomics. https://doi.org/10.1007/978-3-030-70420-9_11
44. “Species delimitation in Noccaea densiflora species complex (Brassicaceae) based on morphological and molecular data” Kurtuluş Özgişi, Burcu Tarıkahya-Hacıoğlu, and Atilla Ocak (2021). Botany. https://doi.org/10.1139/cjb-2020-0184
43. “Species delimitation of the northeastern Anatolian Symphytum (Boraginaceae) taxa” Kurtuluş Özgişi, Burcu Tarikahya Hacioglu (2021). Phytotaxa 516(3). https://doi.org/10.11646/phytotaxa.516.3.3
42. “Fitness benefits of dietary restriction” Zahida Sultanova, Edward R. Ivimey-Cook, Tracey Chapman and Alexei A. Maklakov (2021). Proceedings of the Royal Society B. https://doi.org/10.1098/rspb.2021.1787
41. “Nonadaptive molecular evolution of seminal fluid proteins in Drosophila” Bahar Patlar, Vivek Jayaswal, José M. Ranz, Alberto Civetta (2021). International Journal of Organic Evolution. https://doi.org/10.1111/evo.14297
40. “Sex-specific parental care during postfledging in common ravens” Selin Ersoy, Nino Maag, Thibault Boehly, Palmyre H.Boucherie, Thomas Bugnyar (2021). Animal Behaviour. https://doi.org/10.1016/j.anbehav.2021.09.004
39. “Exploration speed in captivity predicts foraging tactics and diet in free-living red knots” Selin Ersoy, Christine E. Beardsworth, Anne Dekinga, Marcel T. J. van der Meer, Theunis Piersma, Ton G. G. Groothuis, Allert I. Bijleveld (2021). Journal of Animal Ecology. https://doi.org/10.1111/1365-2656.13632
38. “Interspecific and intraspecific size and shape variation in skull of two closely related species Bufo bufo (Linnaeus, 1758) and Bufo verrucosissimus (Pallas, 1814) from Turkey” Nazan ÜZÜM, Nurhayat ÖZDEMİR, Cantekin DURSUN, Bilal KUTRUP, Serkan GÜL (2021). Turkish Journal of Zoology. https://journals.tubitak.gov.tr/zoology/issues/zoo-21-45-2/zoo-45-2-2-2009-8.pdf
37. “Segment number threshold determines juvenile onset of germline cluster expansion in Platynereis dumerilii” Emily Kuehn, David S. Clausen, Ryan W. Null, Bria M. Metzger, Amy D. Willis, B. Duygu Özpolat (2021). Journal of Experimental Zoology and Developmental Evolution. https://doi.org/10.1002/jez.b.23100
36. “Transcriptional response and functional target analyses of miRNA and mRNA to planktivorous fish kairomone exposure in Daphnia magna” Murat Telli, Donna M Gordon, Ercan Selçuk Ünlü (2021). Fundamental and Applied Limnology. https://doi.org/10.1127/fal/2021/1386
35. “Impact of various ecological parameters on the life-history characteristics of Bufotes viridis sitibundus from Turkey” Abdullah Altunışık, Serkan Gül, Nurhayat Özdemir (2021). The Anatomical Record. https://doi.org/10.1002/ar.24571
34. “Light and temperature requirements for germination in the Mediterranean shrub Lavandula stoechas (Lamiaceae)” F. Ghaderi-Far, Z. L. Coşgun, C. Ü. Değirmenci, İ. Tüysüz, C. Ülgen, Ç. Tavşanoğlu (2021). Plant Biology. https://doi.org/10.1111/plb.13329
33. “Landscape genetics and the genetic legacy of Upper Paleolithic and Mesolithic hunter-gatherers in the modern Caucasus” Alexander Gavashelishvili, Alexey Yanchukov, …, Ceren Kazancı (2021). Scientific reports. https://doi.org/10.1038/s41598-021-97519-6
32. “Fire history of Pinus nigra in Western Anatolia: A first dendrochronological study” Evrim A. Şahan, Nesibe Köse, Ünal Akkemik, H. Tuncay Güner, Çağatay Tavşanoğlu, Anıl Bahar, Valerie Trouet, H. Nüzhet Dalfes (2021). Dendrochronologia. https://doi.org/10.1016/j.dendro.2021.125874
31. “Why Turkey should not import plastic waste pollution from developed countries?” Sedat Gündoğdu, Tony R. Walker (2021). Marine Pollution Bulletin. https://doi.org/10.1016/j.marpolbul.2021.112772
30. “Composition and abundance of benthic marine litter in the fishing grounds of Iskenderun Bay, northeastern Levantine coast of Turkey”. Ferhat Büyükdevecia, Sedat Gündoğdu (2021). Marine Pollution Bulletin. https://doi.org/10.1016/j.marpolbul.2021.112840
29. “Stem Cells and Innate Immunity in Aquatic Invertebrates: Bridging Two Seemingly Disparate Disciplines for New Discoveries in Biology” Loriano Ballarin, Arzu Karahan, …, Damjana Drobne (2021). Frontiers in Immunology. https://doi.org/10.3389/fimmu.2021.688106
28. “Demography of swordfish (Xiphias gladius Linneus) populations from the coasts of Turkey, based on mitochondrial DNA and microsatellites” Eren Yüncü, Sinan Can Açan, …, İnci Togan, Füsun Özer (2021). Journal of Fish Biology. https://doi.org/10.1111/jfb.14696
27. “Green or white? Morphology, ancient DNA, and the identification of archaeological North American Pacific Coast sturgeon” E. Dalyn Grindle, Torben C.Rick, Nihan D.Dagtas, …, Courtney A. Hofman (2021). Journal of Archeological Science: Reports. https://doi.org/10.1016/j.jasrep.2021.102887
26. “Predators of the giant pine scale, Marchalina hellenica (Gennadius 1883; Hemiptera: Marchalinidae), out of its natural range in Turkey” Şükran Oğuzoğlu, Mustafa Avcı and Kahraman İpekdal (2021). Open Life Sciences. https://doi.org/10.1515/biol-2021-0066
25. “Molecular characterization and phylogeography of Mediterranean picarels (Spicara flexuosa, S. maena and S. smaris) along the coasts of Turkey and the Eastern Mediterranean” Asli Şalcioğlu, …, Raşit Bilgin (2021). Regional Studies in Marine Science. https://doi.org/10.1016/j.rsma.2021.101836
24. “Peptides of H. sapiens and P. falciparum that are predicted to bind strongly to HLA-A*24:02 and homologous to a SARS-CoV-2 peptide” Yekbun Adiguzel (2021). Acta Tropica. https://doi.org/10.1016/j.actatropica.2021.106013
23. “Molecular mimicry between SARS-CoV-2 and human proteins” Yekbun Adiguzel (2021). Autoimmunity Reviews. https://doi.org/10.1016/j.autrev.2021.102791
22. “Dispersal strategies shape persistence and evolution of human gut bacteria” Falk Hildebrand, Toni I.Gossmann, Clémence Frioux, Ezgi Özkurt, …, Peer Bork (2021). Cell Host & Microbe. https://doi.org/10.1016/j.chom.2021.05.008
21. “Genetic characterization of nodular worm infections in Asian Apes” Erhan Yalcindag, …, Wisnu Nurcahyo & Ivona Foitová (2021). Scientific Reports. https://doi.org/10.1038/s41598-021-86518-2
20. “Genome of the fatal tapeworm Sparganum proliferum uncovers mechanisms for cryptic life cycle and aberrant larval proliferation” Taisei Kikuchi, Mehmet Dayi, …, Toshiaki Kuramochi & Haruhiko Maruyama (2021). Communications Biology. https://doi.org/10.1038/s42003-021-02160-8
19. “Male condition influences female post mating aggression and feeding in Drosophila” Eleanor Bath, Daisy Buzzoni, Toby Ralph, Stuart Wigby, Irem Sepil (2021). Functional Ecology. https://doi.org/10.1111/1365-2435.13791
Also see: https://www.ox.ac.uk/news/science-blog/young-male-fruit-flies-make-females-fight-each-other-more
18. “Drosophila Sex Peptide controls the assembly of lipid microcarriers in seminal fluid” S. Mark Wainwright, Ben R. Hopkins, …, Irem Serpil, …, Deborah C. I. Goberdhan, and Clive Wilson (2021). PNAS. https://doi.org/10.1073/pnas.2019622118
17. “Is plant reproductive efficiency expressed on a continuum of facilitation and competition?” Ali Al-Namazi, Fatih Fazlioglu, Stephen Patrick Bonser (2021). Journal of Vegetation Science. https://doi.org/10.1111/jvs.13043
16. “Pan-Mitogenomics approach discovers diversity and dynamism in the prominent brown rot fungal pathogens” Gozde Yildiz & Hilal Ozkilinc (2021). Front. Microbiol. https://doi.org/10.3389/fmicb.2021.647989
15. “Mining and quarrying activities tend to favor stress-tolerant plants.” Fatih Fazlioglu, Gulaycan P. Keskin, Oznur E. Akcin, & Tugba Ozbucak (2021). Ecological Indicators, 127, 107759. https://doi.org/10.1016/j.ecolind.2021.107759
14. “Variable kinship patterns in Neolithic Anatolia revealed by ancient genomes.” Reyhan Yaka, Igor Mapelli, Damla Kaptan, Ayça Doğu, Maciej Chyleński, Ömür Dilek Erdal, Dilek Koptekin, Kıvılcım Başak Vural, …, Evrim Fer, Sevim Seda Çokoğlu, …, Nihan Dilşad Dağtaş, Gülşah Merve Kılınç, …, Ekin Sağlıcan, …, N. Ezgi Altınışık, Ayshin Ghalichi, Anna Juras, C. Can Bilgin, Christopher J. Knüsel, Anders Götherström, Füsun Özer, & Mehmet Somel (2021). Current Biology. https://doi.org/10.1016/j.cub.2021.03.050
Also see (in Turkish): https://www.aa.com.tr/tr/bilim-teknoloji/dna-analizleri-anadoluda-10-bin-yil-onceki-topluluklarin-geleneklerine-isik-tuttu/2209628
Also see: https://phys.org/news/2021-04-ancient-dna-hints-diverse-stone.html?deviceType=desktop
13. “Million-year-old DNA sheds light on the genomic history of mammoths.” Tom van der Valk, Patrícia Pečnerová, David Díez-del-Molino, Anders Bergström, Jonas Oppenheimer, Stefanie Hartmann, Georgios Xenikoudakis, …, Ekin Sağlıcan, Fatma Rabia Fidan, …, Mehmet Somel, …,, Anders Götherström & Love Dalén (2021). Nature, 591(7849), pp.265-269. https://doi.org/10.1038/s41586-021-03224-9
Also see (in Turkish): https://www.indyturk.com/node/336886/bi%CC%87li%CC%87m/buz-devrinden-bug%C3%BCne-mamutlar%C4%B1n-yery%C3%BCz%C3%BC-maceras%C4%B1-en-eski-dna-ke%C5%9Ffinin-ard%C4%B1ndaki
12. “Trophic ecology of the Atlantic blue crab Callinectes sapidus as an invasive non-native species in the Aegean Sea.” Herdem Aslan & Michael J. Polito (2021). Biological Invasions, pp.1-16. https://doi.org/10.1007/s10530-021-02506-7
11. “Interspecific and intraspecific size and shape variation in skull of two closely related species Bufo bufo (Linnaeus, 1758) and Bufo verrucosissimus (Pallas, 1814) from Turkey.” Nazan Üzüm, Nurhayat Özdemir, Cantekin Dursun, Bilal Kutrup, Serkan Gül (2021). Turkish Journal of Zoology, 45(2), pp.91-101. https://doi.org/10.3906/zoo-2009-8
10. “Much ado about nothing? Off-target amplification can lead to false-positive bacterial brain microbiome detection in healthy and Parkinson’s disease individuals.” Janis R. Bedarf, Naiara Beraza, Hassan Khazneh, Ezgi Özkurt, David Baker, Valeri Borger, Ullrich Wüllner, & Falk Hildebrand (2021). Microbiome 9, 75. https://doi.org/10.1186/s40168-021-01012-1
9. “Additional description and genome analyses of Caenorhabditis auriculariae representing the basal lineage of genus Caenorhabditis” Mehmet Dayi, Natsumi Kanzaki, Simo Sun, Tatsuya Ide, Ryusei Tanaka, Hayato Masuya, Kimiko Okabe, Hisashi Kajimura & Taisei Kikuchi(2021). Scientific Reports 11, 6720 https://doi.org/10.1038/s41598-021-85967-z
8. “Gökçeada Salt Lake: a Case Study of Seasonal Dynamics of Wetland Ecological Communities in the Context of Anthropogenic Pressure and Nature Conservation. ” Herdem Aslan, Belgin Elipek, Onur Gönülal, Özgür Baytut, Yusuf Kurt, & Özgür E. İnanmaz (2021). Wetlands 41, 23. https://doi.org/10.1007/s13157-021-01401-0
7. “Distinguishing between recent balancing selection and incomplete sweep using deep neural networks.” Ulas Isildak, Alessandro Stella, and Matteo Fumagalli (2021). Molecular Ecology Resources https://doi.org/10.1111/1755-0998.13379
Also see: https://www.imperial.ac.uk/news/217873/artificial-intelligence-help-spot-traces-natural/
6. “Warming matters: alpine plant responses to experimental warming.” Fatih Fazlioglu and Justin S. H. Wan. (2021). Climatic Change 164(3), pp. 1-17. https://link.springer.com/article/10.1007/s10584-021-02996-3
5. “Colonization dynamics of Pantoea agglomerans in the wheat root habitat.” Ryszard Soluch, Nils F. Hülter, Devani Romero Picazo, Ezgi Özkurt, Eva H. Stukenbrock, and Tal Dagan (2021). Environmental Microbiology https://doi.org/10.1111/1462-2920.15430
4. “Seed dispersal by the brown bear in a mixed temperate forest: fruit type matters.” Çağatay Tavşanoğlu, Duygu Deniz Kazancı, Anıl Soyumert, Alper Ertürk, and Cihan Ünal Değirmenci (2021). Mammal Research, 1-11. https://doi.org/10.1007/s13364-020-00551-6
3. “Lifelong sex-dependent trajectories of the human gut microbiota.” Ezgi Özkurt, and Falk Hildebrand (2021). Nature Aging, 1(1), 22-23. https://www.nature.com/articles/s43587-020-00019-x
2. “Human population dynamics and Yersinia pestis in ancient northeast Asia.” Gülşah Merve Kılınç, Natalija Kashuba, Dilek Koptekin, Nora Bergfeldt, Handan Melike Dönertaş, Ricardo Rodríguez-Varela, Dmitrij Shergin, Grigorij Ivanov, Dmitrii Kichigin, Kjunnej Pestereva, Denis Volkov, Pavel Mandryka, Artur Kharinskii, Alexey Tishkin, Evgenij Ineshin, Evgeniy Kovychev, Aleksandr Stepanov, Love Dalén, Torsten Günther, Emrah Kırdök, Mattias Jakobsson, Mehmet Somel, Maja Krzewińska, Jan Storå, and Anders Götherström (2021). Science Advances, 7(2), eabc4587. https://doi.org/10.1126/sciadv.abc4587
Also see: https://www.inverse.com/science/ancient-siberian-dna-changed-the-world
Also see (in Turkish): http://bilimveaydinlanma.org/antik-dna-yeni-bilgiler-sunuyor/
1. “Fish out, plastic in: Global pattern of plastics in commercial fishmeal.” Sedat Gündoğdu, Eroldoğan, O. T., Evliyaoğlu, E., Turchini, G. M., & Wu, X. G. (2020). Aquaculture, 736316. https://doi.org/10.1016/j.aquaculture.2020.736316
2020
57. “Archaeological mitogenomes illuminate the historical ecology of sea otters (Enhydra lutris) and the viability of reintroduction” Hannah P. Wellman, Rita M. Austin, Nihan D. Dagtas, Madonna L. Moss, Torben C. Rick and Courtney A. Hofman (2020). Proc Biol Sci https://doi.org/10.1098/rspb.2020.2343
56. “Effects of gradual and sudden changes of salinity and light supply for astaxanthin production in Haematococcus pluvialis (Chlorophyceae)” Telli, Murat; Şahin, Günce (2020). Fundamental and Applied Limnology DOI: 10.1127/fal/2020/1300.
55. “Turkish Salix species: Molecular phylogeny and morphology” Pelin Acar , Bircan Taşkıran , Funda Ö. Değirmenci , Zeki Kaya (2020). FORESTIST DOI: 10.5152/forestist.2020.19029
54. “Impact of biased sex ratio on the genetic diversity, structure, and differentiation of Populus nigra (European black poplar)” Asiye Çiftçi, Burak Yelmen, Funda Ö. Değirmenci, and Zeki Kaya (2020). Botany https://doi.org/10.1139/cjb-2020-0046
53. “Climate Change Prompts Monitoring and Systematic Utilization of Honey Bee Diversity in Turkey” Mert Kükrer, C. Can Bilgin (2020). Bee Studies https://doi.org/10.51458/BSTD.2021.4
52. “Origin and elaboration of a major evolutionary transition in individuality” Ab. Matteen Rafiqi, Arjuna Rajakumar & Ehab Abouheif (2020). Nature https://doi.org/10.1038/s41586-020-2653-6
51. “Complementing daily fire-danger assessment using a novel metric based on burnt area ranking” Gianni Boris Pezzatti, Antonella De Angelis, İsmail Bekar, …, Marco Conedera (2020). Agricultural and Forest Meteorology. https://doi.org/10.1016/j.agrformet.2020.108172
50. “Impact of various ecological parameters on the life‐history characteristics of Bufotes viridis sitibundus from Turkey.” Abdullah Altunışık, Serkan Gül, and Nurhayat Özdemir. (2020). The Anatomical Record. https://doi.org/10.1002/ar.24571
49. “Revisiting Pholidopterini (Orthoptera, Tettigoniidae): Rapid radiation causes homoplasy and phylogenetic instability.” Battal Ciplak, Özgül Yahyaoğlu, and Onur Uluar (2020). Zoologica Scripta. https://onlinelibrary.wiley.com/doi/abs/10.1111/zsc.12463
48. “Evolution, characterization and phylogenetic utility of ITS2 gene in Orthoptera and some Polyneoptera: Highly variable at the order level and highly conserved at the species level.” Onur Uluar and Battal Ciplak (2020). Zootaxa, 4780(1), 54 76. https://www.mapress.com/j/zt/article/view/zootaxa.4780.1.2
47. “Occurrence of microplastics in the gastrointestinal tracts of some edible fish species along the Turkish coast.” Sedat Gündoğdu, Cem Çevik, and Nihan Temiz Ataş. (2020). Turkish Journal of Zoology, 44(4), 312-323. https://journals.tubitak.gov.tr/zoology/issues/zoo-20-44-4/zoo-44-4-2-2003-49.pdf
46. “Investigation on the microfiber release under controlled washings from the knitted fabrics produced by recycled and virgin polyester yarns.” Ilkan Özkan and Sedat Gündoğdu. (2020). The Journal of The Textile Institute, 1-9. https://doi.org/10.1080/00405000.2020.1741760
45. “Stuffed with microplastics: Microplastic occurrence in traditional stuffed mussels sold in the Turkish market.” Sedat Gündoğdu, Cem Çevik, and Nihan Temiz Ataş. (2020). Food Bioscience, 37, 100715. https://doi.org/10.1016/j.fbio.2020.100715
44. “The effect of climate on the radial growth of Oriental Beech in the Southern limit of its distribution area.” Barbaros Yaman, Nesibe Köse, Halil Barış Özel, Evrim A. Şahan. (2020). Forestist, 70(1), 53-60. http://doi.org/10.5152/forestist.2020.19024
43. “The endemic plants in Bartın (Turkey), and their conservation status” Barbaros Yaman, Zafer Kaya, Bilge Tunçkol, Halil Barış Özel. (2020). Biologica Nyssana, 11 (1): 23-29. http://journal.pmf.ni.ac.rs/bionys/index.php/bionys/article/view/344
42. “Seed-Derived Microbial Colonization of Wild Emmer and Domesticated Bread Wheat (Triticum dicoccoides and T. aestivum) Seedlings Shows Pronounced Differences in Overall Diversity and Composition.” Ezgi Özkurt, M. Amine Hassani, Uğur Sesiz, Sven Künzel, Tal Dagan, Hakan Özkan, and Eva H. Stukenbrock. (2020). Mbio, 11(6). https://mbio.asm.org/content/11/6/e02637-20.abstract
41. “Species level classification of Mediterranean sparse forests-maquis formations using Sentinel-2 imagery.” Semiha Demirbaş Çağlayan, Ugur Murat Leloglu, Christian Ginzler, Achilleas Psomas, Uğur S. Zeydanlı, C. Can Bilgin, and Lars T. Waser (2020). Geocarto International 1-20. https://doi.org/10.1080/10106049.2020.1783581
40. “Past, present and future distributions of Oriental beech (Fagus orientalis) under climate change projections.” Dilsad Dagtekin, Evrim A. Şahan, Thomas Denk, Nesibe Köse, & H. Nüzhet Dalfes (2020). Plos one, 15(11), p.e0242280. https://doi.org/10.1371/journal.pone.0242280
39. “The Drosophila seminal proteome and its role in postcopulatory sexual selection.” Wigby, Stuart, Nora C. Brown, Sarah E. Allen, Snigdha Misra, Jessica L. Sitnik, Irem Sepil, Andrew G. Clark, and Mariana F. Wolfner. (2020). Philosophical Transactions of the Royal Society B, 375(1813), p.20200072. https://doi.org/10.1098/rstb.2020.0072
38. “Screening stored wheat beetles for reproductive parasitic endosymbionts in central Turkey.” Kahraman Ipekdal & Tayfun Kaya (2020). Journal of Stored Products Research, 89, p.101732. https://doi.org/10.1016/j.jspr.2020.101732
37. “Nest Survival and Transplantation Success of Formica rufa (Hymenoptera: Formicidae) Ants in Southern Turkey: A Predictive Approach.” Serttaş, Ayhan, Özer Bakar, Uğur Melih Alkan, Arif Yılmaz, Halil İbrahim Yolcu, and Kahraman Ipekdal. (2020). Forests, 11(5), p.533. https://doi.org/10.3390/f11050533
36. “Ömer Besçeli: an unnoticed researcher in the history of pine processionary moth pupation research.” Kahraman Ipekdal & Mustafa Avci. (2020). Entomologist’s Gazette 71.2: 125-129. https://doi.org/10.31184/G00138894.712.1758
35. “Biogeographic problem-solving reveals the Late Pleistocene translocation of a short-faced bear to the California Channel Islands.” Alexis M. Mychajliw, Torben C. Rick, Nihan D. Dagtas, Jon M. Erlandson, Brendan J. Culleton, Douglas J. Kennett, Michael Buckley, and Courtney A. Hofman. (2020). Scientific reports 10, no. 1: 1-13. https://doi.org/10.1038/s41598-020-71572-z
Also see: https://www.ou.edu/cas/news-updates/2020/Giant-Short-Faced-Bear
34. “Impact of nutrients and water level changes on submerged macrophytes along a temperature gradient: a Pan‐European mesocosm experiment.” Zeynep Ersoy ,Ulrike Scharfenberger, Didier L. Baho, Tuba Bucak, Tõnu Feldmann, Josef Hejzlar, Eti E. Levi, …, Erik Jeppesen, Meryem Beklioğlu. (2020). Global Change Biology 00:1–21. https://doi.org/10.1111/gcb.15338
33. “First characterization of the complete mitochondrial genome of fungal plant-pathogen Monilinia laxa which represents the mobile intron rich structure.” Gozde Yildiz, and Hilal Ozkilinc. (2020). Scientific Reports, 10(1), pp.1-14. https://doi.org/10.1038/s41598-020-70611-z
32. “Changes in functional composition and diversity of waterbirds: The roles of water level and submerged macrophytes.” İbrahim Kaan Özgencil, Meryem Beklioğlu, Korhan Özkan, Çağatay Tavşanoğlu, and Niccolò Fattorini. (2020). Freshwater Biology. https://doi.org/10.1111/fwb.13531
31. “Automated Bird Counting with Deep Learning for Regional Bird Distribution Mapping.” Akçay, Hüseyin Gökhan, Bekir Kabasakal, Duygugül Aksu, Nusret Demir, Melih Öz, and Ali Erdoğan. (2020). Animals 10(7), 1207. https://doi.org/10.3390/ani10071207
30. “Speciation and changes in male-gene expression in Drosophila.” Patlar, B., & Civetta, A. (2020). Genome, 0, 0. https://doi.org/10.1139/gen-2020-0025
29. “Influences of climate and nutrient enrichment on the multiple trophic levels of Turkish shallow lakes.” Meryem Beklioğlu, Tuba Bucak, Eti E. Levi, Şeyda Erdoğan, Arda Özen, Nur Filiz, Gizem Bezirci, Ayşe İdil Çakıroğlu, Ü. Nihan Tavşanoğlu, Didem Gökçe, Nilsun Demir, Müfit Özuluğ, Mustafa Duran, Korhan Özkan, Sandra Brucet & Erik Jeppesen (2020). Inland Waters 1-13. https://doi.org/10.1080/20442041.2020.1746599
28. “Impacts of multiple stressors on freshwater biota across spatial scales and ecosystems.” Sebastian Birk, Daniel Chapman, Laurence Carvalho, Bryan M. Spears, …, Meryem Beklioğlu, …, Tuba Bucak, …, Uğur Işkın, …& Daniel Hering (2020). Nature Ecology & Evolution 4, no. 8 1060-1068. https://doi.org/10.1038/s41559-020-1216-4
27. “Characterization of microplastic pollution in tadpoles living in small water-bodies from Rize, the northeast of Turkey.” Karaoğlu, K. and Gül, S. (2020). Chemosphere, p.126915. https://doi.org/10.1016/j.chemosphere.2020.126915
26. “Taxonomic assessment and distribution of common toads (Bufo bufo and B. verrucosissimus) in Turkey based on morphological and molecular data.” Özdemir, N., Dursun, C., Üzüm, N., Kutrup, B. and Gül, S. (2020). Amphibia-Reptilia, 1(aop), pp.1-13. https://doi.org/10.1163/15685381-bja10009
25. “Male reproductive aging arises via multifaceted mating-dependent sperm and seminal proteome declines, but is postponable in Drosophila.” Sepil, I., Hopkins, B.R., Dean, R., Bath, E., Friedman, S., Swanson, B., Ostridge, H.J., Harper, L., Buehner, N.A., Wolfner, M.F. and Konietzny, R. (2020). Proceedings of the National Academy of Sciences, 117(29), pp.17094-17103. https://doi.org/10.1073/pnas.2009053117
Also see (in Turkish): https://medyascope.tv/2020/07/07/yasli-erkeklerde-ureme-kapasitesindeki-azalmayi-yavaslatmanin-mumkun-oldugunu-kanitladi-dr-irem-sepil-ile-soylesi/
Also see: https://www.ox.ac.uk/news/2020-07-06-male-fruit-flies-decline-fertility-age-not-only-driven-changes-sperm
24. “Structural variation in Drosophila melanogaster spermathecal ducts and its association with sperm competition dynamics.” Hopkins, Ben R., Sepil, I., Wigby, Stuart. (2020). Royal Society Open Science, 7(3), 200130. https://doi.org/10.1098/rsos.200130
23. “Patterns of mtDNA introgression suggest population replacement in Palaearctic whiskered bat species.” Çoraman, E., Dundarova, H., Dietz, C., & Mayer, F. (2020). Royal Society Open Science, 7(6), 191805. https://doi.org/10.1098/rsos.191805
Also see (in Turkish): https://haberler.itu.edu.tr/haberdetay/2020/06/05/doga-ekoloji-ve-evrim-serisi-dna-turlerin-tarihini-nasil-sakliyor
22. “Reduced Genome of the Gut Symbiotic Bacterium “Candidatus Benitsuchiphilus tojoi” Provides Insight Into Its Possible Roles in Ecology and Adaptation of the Host Insect.” Mondal, S. I., Akter A., Koga R., Hosokawa T., Dayi M., Murase K., Tanaka R., Shigenobu S., Fukatsu T., and Kikuchi T. (2020) Frontiers in Microbiology, 11, 840. https://doi.org/10.3389/fmicb.2020.00840
21. “Condition‐dependent mortality exacerbates male (but not female) reproductive senescence and the potential for sexual conflict.” Sultanova, Z., García‐Roa, R., & Carazo, P. (2020). Journal of Evolutionary Biology https://doi.org/10.1111/jeb.13636
20. “Phylogeography and population dynamics of the Eastern Mediterranean whiting (Merlangius merlangus) from the Black Sea, the Turkish Straits System, and the North Aegean Sea.” Şalcıoğlu, A., Gubili, C., Krey, G., Sönmez, A. Y., & Bilgin, R. (2020). Fisheries Research, 229, p.105614. https://doi.org/10.1016/j.fishres.2020.105614
19. “Ecological assembly processes of the bacterial and fungal microbiota of wild and domesticated wheat species.” Hassani M. A., Özkurt, E., Franzenburg, S., Stukenbrock, E. H. (2020) Phytobiomes Journal, PBIOMES-09. https://doi.org/10.1094/PBIOMES-01-20-0001-SC
18. “Camera-trap records of breeding Eurasian lynx (Lynx lynx) at the Mount Ilgaz Wildlife Reserve.” Soyumert, Anıl. (2020) Hacettepe Journal of Biology and Chemistry, 48 (2), 191-196. https://doi.org/10.15671/hjbc.660698
17. “Camera-Trapping Two Felid Species: Monitoring Eurasian Lynx (Lynx lynx) and Wildcat (Felis silvestris) Populations in Mixed Temperate Forest Ecosystems.” Soyumert, Anıl. (2020) Mammal Study, 45(1), 41-48. https://doi.org/10.3106/ms2019-0046
16. “Cross-regional modelling of fire occurrence in the Alps and the Mediterranean Basin.” Bekar, İsmail, Tavşanoğlu, Çağatay, Pezzatti, G. B., Vacik, H., Pausas, J. G., Bugmann, H., & Petter, G. (2020) International Journal of Wildland Fire. https://doi.org/10.1071/WF19158
15. “From zygote to a multicellular soma: body size affects optimal growth strategies under cancer risk.” Erten, E. Yagmur and Hanna Kokko. (2020) Evol Appl. https://doi.org/10.1111/eva.12969
14. “Love Off, Fear On? Brown Bear Acceptance by Teenagers in European Countries with Differing Population Statuses. ” Balčiauskas, L., Ambarlı, Huseyin, Balčiauskienė, L., Bagrade, G., Kazlauskas, M., Ozoliņš, J., … & Žunna, A. (2020) Sustainability, 12(6), 2397. https://www.mdpi.com/2071-1050/12/6/2397
13. “Territory establishment, song learning strategies and survival in song sparrows. “Akçay, Çağlar, S. Elizabeth Campbell, Saethra Darling, and Michael D. Beecher. Ethology. 2020; 00: 1– 10. https://doi.org/10.1111/eth.13014
12. “Song overlapping, noise, and territorial aggression in great tits.” Akçay, Çağlar, (2020)Behavioral Ecology. https://doi.org/10.1093/beheco/araa030
11. “Are signals of aggressive intent loss honest in urban habitats?” Akçay, Çağlar, Michelle L. Beck, and Kendra B. Sewall. (2020) Behavioral Ecology, 31(1), 213-221. https://doi.org/10.1093/beheco/arz179
10. “Altitudinal Effects on Innate Immune Response of a Subterranean Rodent.” Solak, Halil Mert, Alexey Yanchukov, Faruk Çolak, Ferhat Matur, Mustafa Sözen, İhsan Cihan Ayanoğlu, and Jamie C. Winternitz. (2020) Zoological Science 37, no. 1, 1-11. https://doi.org/10.2108/zs190067.
9. “From refugia to contact: Pine processionary moth hybrid zone in a complex biogeographic setting.” İpekdal, Kahraman, Christian Burban, Laure Sauné, Andrea Battisti, and Carole Kerdelhué. (2020) Ecology and Evolution. https://doi.org/10.1002/ece3.6018.
8. “Zooplankton Biodiversity in the Golden Horn Estuary after the Opening of the Water Channel from the Strait of Istanbul, Turkey.” Isinibilir, Melek, and Onur Dogan. (2020) Turkish Journal of Fisheries and Aquatic Sciences 20 (2): 147–58. https://doi.org/10.4194/1303-2712-v20_2_07.
7. “Polysaccharide Niche Partitioning of Distinct Polaribacter Clades during North Sea Spring Algal Blooms.” Avcı, Burak, Karen Krüger, Bernhard M. Fuchs, Hanno Teeling, and Rudolf I. Amann. 2020. The ISME Journal, 1–15. https://doi.org/10.1038/s41396-020-0601-y.
Also see: https://www.mpi-bremen.de/en/What-Galapagos-finches-and-marine-bacteria-have-in-common.html
6. “Fire-Created Habitats Support Large Mammal Community in a Mediterranean Landscape.” Soyumert, Anil, Alper Ertürk, and Çağatay Tavşanoğlu. 2019. Mammal Research. https://doi.org/10.1007/s13364-019-00473-y.
5. “TRY Plant Trait Database – Enhanced Coverage and Open Access.” Kattge, Jens, Gerhard Bönisch, Sandra Díaz, Sandra Lavorel, Iain Colin Prentice, Paul Leadley, Susanne Tautenhahn, Cagatay Tavsanoglu, et al. 2020. Global Change Biology 26 (1): 119–88. https://doi.org/10.1111/gcb.14904.
4. “Wildfire Management in Mediterranean-Type Regions: Paradigm Change Needed.” Moreira, Francisco, Davide Ascoli, Hugh Safford, Mark A Adams, José M Moreno, José M C Pereira, Filipe X Catry, Cagatay Tavsanoglu, et al. 2020. Environmental Research Letters 15 (1): 011001. https://doi.org/10.1088/1748-9326/ab541e.
3. Genotype-by-Environment Interactions for Seminal Fluid Expression and Sperm Competitive Ability.” Patlar, Bahar, and Steven A. Ramm. 2020. “ Journal of Evolutionary Biology 33 (2): 225–36. https://doi.org/10.1111/jeb.13568.
2. “Seminal Fluid-Mediated Manipulation of Post-Mating Behavior in a Simultaneous Hermaphrodite.” Patlar, Bahar, Michael Weber, Tim Temizyürek, and Steven A. Ramm. 2020. Current Biology 30 (1): 143-149.e4. https://doi.org/10.1016/j.cub.2019.11.018.
1. “An Evolutionary Perspective on the Impact of Genomic Copy Number Variation on Human Health.” Saitou, Marie, and Omer Gokcumen. 2020. Journal of Molecular Evolution 88 (1): 104–19. https://doi.org/10.1007/s00239-019-09911-6.
2019
37. “Multi-modal communication: song sparrows increase signal redundancy in noise” Çağlar Akçay and Michael D. Beecher (2019). Biology Letters. https://doi.org/10.1098/rsbl.2019.0513
36. “Analysis of wolf–human conflicts: implications for damage mitigation measures” Hüseyin Ambarlı (2019). European Journal of Wildlife Research. https://link.springer.com/article/10.1007/s10344-019-1320-4
35. “Assessing caracal-prey interactions by spatial and temporal analyses” Deniz Mengüllüoğlu & Hüseyin Ambarlı (2019). European Journal of Wildlife Research. https://link.springer.com/article/10.1007/s10344-019-1294-2
34. “Belt and Road Initiative may create new supplies for illegal wildlife trade in large carnivores” Mohammad S. Farhadinia, Aishwarya Maheshwari, Muhammad Ali Nawaz, Hüseyin Ambarlı, Mariya Alexeevna Gritsina, Maxim A. Koshkin, Tatjana Rosen, Amy Hinsley & David W. Macdonald (2019). Nature Ecology & Evolution https://www.nature.com/articles/s41559-019-0963-6
33. “Sex ratio at mating does not modulate age fitness effects in Drosophila melanogaster” Zahida Sultanova, Pau Carazo (2019). Ecology and Evolution. https://doi.org/10.1002/ece3.5227
32. “Stage-specific transcriptome of Bursaphelenchus xylophilus reveals temporal regulation of effector genes and roles of the dauer-like stages in the lifecycle” Suguru E. Tanaka, Mehmet Dayi, Yasunobu Maeda, Isheng J. Tsai, Ryusei Tanaka, Mark Bligh, Yuko Takeuchi-Kaneko, Kenji Fukuda, Natsumi Kanzaki & Taisei Kikuchi (2019). Scientific Reports. https://doi.org/10.1038/s41598-019-42570-7
31. “Mediterranean dirty edge: High level of meso and macroplastics pollution on the Turkish coast” Sedat Gündoğdu, Cem Çevik (2019). Environmental Pollution. https://doi.org/10.1016/j.envpol.2019.113351
30. “Potential interaction between plastic litter and green turtle Chelonia mydas during nesting in an extremely polluted beach” Sedat Gündoğdu , İrem Nur Yeşilyurt , Celal Erbaş (2019). Marine Pollution Bulletin. https://doi.org/10.1016/j.marpolbul.2019.01.032
29. “Consequences of habitat fragmentation on genetic diversity and structure of Salix alba L. populations in two major river systems of Turkey” Funda O. Degirmenci, Pelin Acar & Zeki Kaya (2019). Tree Genetics & Genomes. https://doi.org/10.1007/s11295-019-1365-2
28. “Ancient DNA (aDNA) extraction and amplification from 3500-year-old charred economic crop seeds from Kaymakçı in Western Turkey: comparative sequence analysis using the 26S rDNA gene” Asiye Ciftci, Funda O. Değirmenci, Christina Luke, Christopher H. Roosevelt, John M. Marston & Zeki Kaya (2019). Genetic Resources and Crop Evolution. https://doi.org/10.1007/s10722-019-00783-9
27. “Resolving the Insertion Sites of Polymorphic Duplications Reveals a HERC2 Haplotype under Selection.” Saitou, Marie, and Omer Gokcumen. 2019. Genome Biology and Evolution 11 (6): 1679–90. https://doi.org/10.1093/gbe/evz107.
26. “Fine-Scale Characterization of Genomic Structural Variation in the Human Genome Reveals Adaptive and Biomedically Relevant Hotspots.” Lin, Yen Lung, and Omer Gokcumen. 2019. Genome Biology and Evolution 11 (4): 1136–51. https://doi.org/10.1093/gbe/evz058.
25. “Phylo-Comparative Analyses Reveal the Dual Role of Drift and Selection in Reproductive Character Displacement.” Sağlam, İsmail K., Michael R. Miller, Sean O’Rourke, and Selim S. Çağlar. 2019. Molecular Phylogenetics and Evolution 140 (August). https://doi.org/10.1016/j.ympev.2019.106597.
24. “A Scalable Culturing System for the Marine Annelid Platynereis Dumerilii.” Kuehn, Emily, Alexander W. Stockinger, Jerome Girard, Florian Raible, and B. Duygu Özpolat. 2019. PLoS ONE 14 (12): 1–21. https://doi.org/10.1371/journal.pone.0226156.
23. “Filamentation Regulatory Pathways Control Adhesion-Dependent Surface Responses in Yeast.” Chow, Jacky, Izzy Starr, Sheida Jamalzadeh, Omar Muniz, Anuj Kumar, Omer Gokcumen, Denise M. Ferkey, and Paul J. Cullen. 2019. Genetics 212 (3): 667–90. https://doi.org/10.1534/genetics.119.302004.
22. “Divergent Allocation of Sperm and the Seminal Proteome along a Competition Gradient in Drosophila Melanogaster.” Hopkins, Ben R., Irem Sepil, Marie Laëtitia Thézénas, James F. Craig, Thomas Miller, Philip D. Charles, Roman Fischer, et al. 2019. Proceedings of the National Academy of Sciences of the United States of America 116 (36): 17925–33. https://doi.org/10.1073/pnas.1906149116.
Also see: http://www.ox.ac.uk/news/2019-08-15-lord-flies-competition-breeds-better-ejaculate
21. “Palaeo-Eskimo Genetic Ancestry and the Peopling of Chukotka and North America.” Flegontov, Pavel, N. Ezgi Altınışık, Piya Changmai, Nadin Rohland, Swapan Mallick, Nicole Adamski, Deborah A. Bolnick, et al. 2019. Nature 570 (7760): 236–40. https://doi.org/10.1038/s41586-019-1251-y.
Also see (in Turkish): https://evrimagaci.org/paleoeskimolar-modern-kuzey-amerikalilara-bol-miktarda-genetik-miras-birakti-662
Also see: https://www.shh.mpg.de/1333290/arctic-hunter-gatherer
20. “Heat Shock-Stimulated Germination in Mediterranean Basin Plants in Relation to Growth Form, Dormancy Type and Distributional Range.” Kazancı, Duygu Deniz, and Çağatay Tavşanoğlu. 2019. Folia Geobotanica 54 (1–2): 85–98. https://doi.org/10.1007/s12224-019-09349-0.
19. “BMP Signaling Inhibition in Drosophila Secondary Cells Remodels the Seminal Proteome and Self and Rival Ejaculate Functions.” Hopkins, Ben R., Irem Sepil, Sarah Bonham, Thomas Miller, Philip D. Charles, Roman Fischer, Benedikt M. Kessler, Clive Wilson, and Stuart Wigby. 2019. Proceedings of the National Academy of Sciences of the United States of America 116 (49): 24719–28. https://doi.org/10.1073/pnas.1914491116.
18. “A Candidate Causal Variant Underlying Both Higher Intelligence and Increased Risk of Bipolar Disorder.” Shen, Susan Q., Jeong Sook Kim-Han, Lin Cheng, Duo Xu, Omer Gokcumen, Andrew E.O. Hughes, Connie A. Myers, and Joseph C. Corbo. 2019. BioRxiv, 580258. https://doi.org/10.1101/580258.
17. “Development of Social Learning and Play in BaYaka Hunter-Gatherers of Congo.” Salali, Gul Deniz, Nikhil Chaudhary, Jairo Bouer, James Thompson, Lucio Vinicius, and Andrea Bamberg Migliano. 2019. Scientific Reports 9 (1): 11080. https://doi.org/10.1038/s41598-019-47515-8.
16. “Ancient DNA from Mastics Solidifies Connection between Material Culture and Genetics of Mesolithic Hunter–Gatherers in Scandinavia.” Kashuba, Natalija, Emrah Kırdök, Hege Damlien, Mikael A. Manninen, Bengt Nordqvist, Per Persson, and Anders Götherström. 2019. Communications Biology 2 (1). https://doi.org/10.1038/s42003-019-0399-1.
Also see (in Turkish): https://www.bilimma.com/iskandinavya-nin-ilk-sakinlerine-ait-dna-lar-sakizlarda-kesfedildi/
Also see: https://www.su.se/english/research/research-news/chewing-gums-reveal-the-oldest-scandinavian-human-dna-1.438237
15. “Adding Ecology into Phylogeography: Ecological Niche Models and Phylogeography in Tandem Reveals the Demographic History of the Subalpine Warbler Complex.” Perktaş, Utku, Thilina N. De Silva, Esther Quintero, and Çağatay Tavşanoğlu. 2019. Bird Study 66 (2): 234–42. https://doi.org/10.1080/00063657.2019.1654977.
14. “Shades of Complexity: New Perspectives on the Evolution and Genetic Architecture of Human Skin.” Quillen, Ellen E., Heather L. Norton, Esteban J. Parra, Frida Lona-Durazo, Khai C. Ang, Florin Mircea Illiescu, Laurel N. Pearson, Omer Gokcumen, et al. 2019. American Journal of Physical Anthropology 168 (September 2018): 4–26. https://doi.org/10.1002/ajpa.23737.
Also see: http://www.buffalo.edu/news/releases/2019/03/024.html
13. “Archaic Hominin Introgression into Modern Human Genomes.” Gokcumen, Omer. 2019. American Journal of Physical Anthropology, no. August: 1–14. https://doi.org/10.1002/ajpa.23951.
12. “Consequences of Habitat Fragmentation on Genetic Diversity and Structure of Salix Alba L. Populations in Two Major River Systems of Turkey.” Degirmenci, Funda O., Pelin Acar, and Zeki Kaya. 2019. Tree Genetics and Genomes 15 (4). https://doi.org/10.1007/s11295-019-1365-2.
11. “Interactions and Coadaptation in Plant Metaorganisms.” Hassani, M. Amine, Ezgi Özkurt, Heike Seybold, Tal Dagan, and Eva H. Stukenbrock. 2019. Annual Review of Phytopathology 57 (1): 483–503. https://doi.org/10.1146/annurev-phyto-082718-100008.
10. Ancient DNA (ADNA) Extraction and Amplification from 3500-Year-Old Charred Economic Crop Seeds from Kaymakçı in Western Turkey: Comparative Sequence Analysis Using the 26S RDNA Gene.” Ciftci, Asiye, Funda O. Değirmenci, Christina Luke, Christopher H. Roosevelt, John M. Marston, and Zeki Kaya. 2019. “Genetic Resources and Crop Evolution 66 (6): 1279–94. https://doi.org/10.1007/s10722-019-00783-9.
9. “Last Exit before the Brink: Conservation Genomics of the Cambodian Population of the Critically Endangered Southern River Terrapin.” Çilingir, F. Gözde, Adeline Seah, Brian D. Horne, Sitha Som, David P. Bickford, and Frank E. Rheindt. 2019. Ecology and Evolution 9 (17): 9500–9510. https://doi.org/10.1002/ece3.5434.
8. “Independent Amylase Gene Copy Number Bursts Correlate with Dietary Preferences in Mammals.” Pajic, Petar, Pavlos Pavlidis, Kirsten Dean, Lubov Neznanova, Rose Anne Romano, Danielle Garneau, Erin Daugherity, Anja Globig, Stefan Ruhl, and Omer Gokcumen. 2019. ELife 8: 1–22. https://doi.org/10.7554/eLife.44628.
Also see: https://arts-sciences.buffalo.edu/biological-sciences/news-events/news/gokcumen-amylase.html
7. “Loss-of-Function Tolerance of Enhancers in the Human Genome.” Xu, Duo, Omer Gokcumen, and Ekta Khurana. 2019. BioRxiv. https://doi.org/10.1101/608257
6. “Molecular Footprint of Medawar’s Mutation Accumulation Process in Mammalian Aging.” Turan, Zeliha Gözde, Poorya Parvizi, Handan Melike Dönertaş, Jenny Tung, Philipp Khaitovich, and Mehmet Somel. 2019. “Molecular Footprint of Medawar’s Mutation Accumulation Process in Mammalian Aging.” Aging Cell 18 (4): 1–12. https://doi.org/10.1111/acel.12965.
5. The Nature of the Old World Savannah Palaeobiome.” Fortelius, Mikael, Faysal Bibi, Hui Tang, Indrė Žliobaitė, Jussi T. Eronen, and Ferhat Kaya. 2019. “ Nature Ecology and Evolution 3 (4): 504. https://doi.org/10.1038/s41559-019-0857-7.
4. “Short-Term Fish Predation Destroys Resilience of Zooplankton Communities and Prevents Recovery of Phytoplankton Control by Zooplankton Grazing.” Ersoy, Zeynep, Sandra Brucet, Mireia Bartrons, and Thomas Mehner. 2019. PLoS ONE 14 (2): 1–15. https://doi.org/10.1371/journal.pone.0212351.
3. “Reticulate Evolutionary History of a Western Palaearctic Bat Complex Explained by Multiple MtDNA Introgressions in Secondary Contacts.” Çoraman, Emrah, Christian Dietz, Elisabeth Hempel, Astghik Ghazaryan, Eran Levin, Primož Presetnik, Maja Zagmajster, and Frieder Mayer. 2019. Journal of Biogeography 46 (2): 343–54. https://doi.org/10.1111/jbi.13509.
2. “Life history responses of meerkats to seasonal changes in extreme environments” Paniw, M., Maag N., Cozzi, G., Clutton-Brock, T., Ozgul, A. (2019) Science Vol. 363, Issue 6427, pp. 631-635 http://DOI: 10.1126/science.aau5905
Also see (In Turkish): https://medyascope.tv/2019/02/08/doc-arpat-ozgul-kalahari-colunde-yasayan-mirketlerin-kaderi-mevsimsel-degisimin-detaylarina-bagli/
1. “The importance of lagomorphs for the Eurasian lynx in Western Asia: Results from a large scale camera-trapping survey in Turkey.” Soyumert, Anıl, Alper Ertürk, and Çağatay Tavşanoğlu. (2019) Mammalian Biology. https://doi.org/10.1016/j.mambio.2019.01.003
Also see (in Turkish): http://www.ekoevo.org/vasaklar-kimin-pesinde/
2018
60. “Rapid sex-specific evolution of age at maturity is shaped by genetic architecture in Atlantic salmon” Czorlich, Yann, Tutku Aykanat, Jaakko Erkinaro, Panu Orell, and Craig R. Primmer. bioRxiv (2018): 317255. doi:10.5061/dryad.7hm4708.
59. “Genomes reveal marked differences in the adaptive evolution between orangutan species.” Mattle-Greminger, M. P., Sonay, T. B., Nater, A., Pybus, M., Desai, T., de Valles, G., … & van Schaik, C. P. (2018). Genome biology, 19(1), 193. https://doi.org/10.1186/s13059-018-1562-6
58. “Effects of trophic status, water level, and temperature on shallow lake metabolism and metabolic balance: A standardized pan‐European mesocosm experiment” Scharfenberger, U., Jeppesen, E., Beklioğlu, M., Søndergaard, M., Angeler, D. G., Çakıroğlu, A. İ., … & Šorf, M. (2018). Limnology and Oceanography. https://doi.org/10.1002/lno.11064
57. “Snapshot Surveys for Lake Monitoring, More Than a Shot in the Dark” Mantzouki, E., Beklioğlu, M., Brookes, J., de Senerpont Domis, L. N., Dugan, H. A., Doubek, J. P., … & Rose, K. C. (2018). Frontiers in Ecology and Evolution, 6, 201. https://doi.org/10.3389/fevo.2018.00201
56. “Temperature Effects Explain Continental Scale Distribution of Cyanobacterial Toxins”
55. “Effects of warming and nutrients on the microbial food web in shallow lake mesocosms” Zingel, P., Cremona, F., Nõges, T., Cao, Y., Neif, É.M., Coppens, J., Işkın, U., Lauridsen, T.L., Davidson, T.A., Søndergaard, M. and Beklioglu, M. (2018). European journal of protistology, 64, 1-12.
54. “Size diversity and species diversity relationships in fish assemblages of Western Palearctic lakes” Brucet, S., Arranz, I., Mehner, T., Argillier, C., Beklioğlu, M., Benejam, L., … & Winfield, I. J. (2018). Ecography, 41(7), 1064-1076. https://doi.org/10.1111/ecog.03255
53. “Parapatric genetic divergence among deep evolutionary lineages in the Mediterranean green crab, Carcinus aestuarii (Brachyura, Portunoidea, Carcinidae), accounts for a sharp phylogeographic break in the Eastern Mediterranean” Deli, T., Kalkan, E., Karhan, S. Ü., Uzunova, S., Keikhosravi, A., Bilgin, R., & Schubart, C. D. (2018). BMC evolutionary biology, 18(1), 53. https://doi.org/10.1186/s12862-018-1167-4
52. “Phylogeny and genetic structure in the genus Secale” Maraci, Ö., Özkan, H., & Bilgin, R. (2018). PloS one, 13(7), e0200825. https://doi.org/10.1371/journal.pone.0200825
51. “Linking big models to big data: efficient ecosystem model calibration through Bayesian model emulation.” Fer, I., Kelly, R., Moorcroft, P. R., Richardson, A. D., Cowdery, E. M., & Dietze, M. C. (2018). Biogeosciences, 15(19), 5801-5830. https://doi.org/10.5194/bg-15-5801-2018
50. “Zooplankton grazing selectivity regulates herbivory and dominance of toxic phytoplankton over multiple prey generations” Ger, K. A., Naus‐Wiezer, S., De Meester, L., & Lürling, M. (2018). Limnology and Oceanography. https://doi.org/10.1002/lno.11108
49. “Investigating spatiotemporal dynamics and synchrony of influenza epidemics in Australia: An agent-based modelling approach” Cliff, O. M., Harding, N., Piraveenan, M., Erten, E. Y., Gambhir, M., & Prokopenko, M. (2018). Simulation Modelling Practice and Theory. https://doi.org/10.1016/j.simpat.2018.07.005
48. “Acculturation orientations affect the evolution of a multicultural society” Erten, E. Y., van den Berg, P., & Weissing, F. J. (2018). Nature communications, 9(1), 58. https://doi.org/10.1038/s41467-017-02513-0
47. “Wolbachia diversity and cytoplasmic incompatibility patterns in Culex pipiens populations in Turkey” Altinli, M., Gunay, F., Alten, B., Weill, M., & Sicard, M. (2018).
46. “Ancient DNA from chewing gums connects material culture and genetics of Mesolithic hunter-gatherers in Scandinavia” Kashuba, N., Kirdök, E., Damlien, H., Manninen, M. A., Nordqvist, B., Persson, P., & Götherström, A. (2018). bioRxiv, 485045. https://doi.org/10.1101/485045
45. “An evolutionary transcriptomics approach links CD36 to membrane remodeling in replicative senescence.” Saitou, M., Lizardo, D. Y., Taskent, R. O., Millner, A., Gokcumen, O., & Atilla-Gokcumen, G. E. (2018). Molecular Omics. https://doi.org/10.1039/c8mo00099a
44. “Shades of complexity: New perspectives on the evolution and genetic architecture of human skin” Quillen, E.E., Norton, H.L., Parra, E.J., Lona‐Durazo, F., Ang, K.C., Illiescu, F.M., Pearson, L.N., Shriver, M.D., Lasisi, T., Gokcumen, O. and Starr, I., (2018). American journal of physical anthropology. https://doi.org/10.1002/ajpa.23737
43. “Complex evolution of the GSTM gene family involves sharing of GSTM1 deletion polymorphism in humans and chimpanzees.” Saitou, M., Satta, Y., Gokcumen, O., & Ishida, T. (2018). BMC genomics, 19(1), 293.
42. “Metal Transport in the Developing Plant Seed” Eroglu, S. (2018). Advances in Botanical Research. https://doi.org/10.1016/bs.abr.2018.09.010
41. “Ancient genomes suggest the eastern Pontic-Caspian steppe as the source of western Iron Age nomads” Krzewińska, M., Kılınç, G. M., Juras, A., Koptekin, D., Chyleński, M., Nikitin, A. G., … & Sungatov, F. A. (2018). Science advances, 4(10), eaat4457.
40. “Evolutionary determinants of genome-wide nucleotide composition.” Long, H., Sung, W., Kucukyildirim, S., Williams, E., Miller, S. F., Guo, W., … & Berne, C. (2018). Nature ecology & evolution, 2(2), 237. https://doi.org/10.1038/s41559-017-0425-y
39. “Post-fire recovery of the plant community in Pinus brutia forests: Active vs. indirect restoration techniques after salvage logging.” Urker, O., Tavşanoğlu, Ç., & Gurkan, B. (2018). IForest – Biogeosciences and Forestry, 11(5), 635-642. doi:10.3832/ifor2645-011
38. “Taxonomic notes on the genus Chaenorhinum (Plantaginaceae) in Turkey.” Zare, G., Özüdoğru, B., Ergan, G., & Tavşanoğlu, Ç. (2018). Acta Botanica Croatica, 77(2), 209-213. doi:10.2478/botcro-2018-0011
37. “Alpha- and beta-mannan utilization by marine Bacteroidetes.”Chen, J., Robb, C. S., Unfried, F., Kappelmann, L., Markert, S., Song, T., Harder J., Avcı, B., Becher, D., Xie, P., Amann, R.I., Hehemann, J.H., Schweder, T., Teeling, H. (2018). Environmental Microbiology, 20(11), 4127-4140. doi:10.1111/1462-2920.14414
36. “Adaptive mechanisms that provide competitive advantages to marine bacteroidetes during microalgal blooms.” Unfried, F., Becker, S., Robb, C. S., Hehemann, J., Markert, S., Heiden, S. E., Hinzke T., Becher D., Reintjes G., Krüger K., Avcı, B., Kappelmann, L., Hahnke, R.L., Fischer, T., Harder, J., Teeling, H., Fuchs, B., Barbeyron, T., Amann, R.I.& Schweder, T. (2018). The ISME Journal, 12(12), 2894-2906. doi:10.1038/s41396-018-0243-5
35. “Density feedbacks mediate effects of environmental change on population dynamics of a semidesert rodent.” Nater, C. R., Benthem, K. J., Canale, C. I., Schradin, C., & Ozgul, A. (2018). Journal of Animal Ecology, 87(6), 1534-1546. doi:10.1111/1365-2656.12888
34. “Density-dependent dispersal strategies in a cooperative breeder.” Maag, N., Cozzi, G., Clutton-Brock, T., & Ozgul, A. (2018). Ecology, 99(9), 1932-1941. doi:10.1002/ecy.2433
33. “Matrix Models of Hierarchical Demography: Linking Group- and Population-Level Dynamics in Cooperative Breeders.” Bateman, A. W., Ozgul, A., Krkošek, M., & Clutton-Brock, T. H. (2018). The American Naturalist, 192(2), 188-203. doi:10.1086/698217
32. “Reply to ‘Whaling catch data are not reliable for analyses of body size shifts’.” Clements, C. F., Blanchard, J. L., Nash, K. L., Hindell, M. A., & Ozgul, A. (2018). Nature Ecology & Evolution, 2(5), 757-758. doi:10.1038/s41559-018-0537-z
31. “Indicators of transitions in biological systems.” Clements, C. F., & Ozgul, A. (2018). Ecology Letters,21(6), 905-919. doi:10.1111/ele.12948
30. “The interacting effects of forestry and climate change on the demography of a group-living bird population.” Layton-Matthews, K., Ozgul, A., & Griesser, M. (2018). Oecologia, 186(4), 907-918. doi:10.1007/s00442-018-4100-z
29. “Lion population dynamics: Do nomadic males matter?” Borrego, N., Ozgul, A., Slotow, R., & Packer, C. (2018). Behavioral Ecology, 29(3), 660-666. doi:10.1093/beheco/ary018
28. “Socially informed dispersal in a territorial cooperative breeder.” Cozzi, G., Maag, N., Börger, L., Clutton-Brock, T. H., & Ozgul, A. (2018). Journal of Animal Ecology, 87(3), 838-849. doi:10.1111/1365-2656.12795
27. “Interactive life-history traits predict sensitivity of plants and animals to temporal autocorrelation.” Paniw, M., Ozgul, A., & Salguero-Gómez, R. (2017). Ecology Letters, 21(2), 275-286. doi:10.1111/ele.12892
26. “Collapse and rescue of cooperation in evolving dynamic networks.” Akcay, E. (2017). doi:10.1101/226563
25. “Competition and niche construction in a model of cancer metastasis.” Qian, J., & Akcay, E. (2017). doi:10.1101/228585
24. “Patterns of activity and body temperature of Aldabra giant tortoises in relation to environmental temperature.” Falcón, W., Baxter, R. P., Furrer, S., Bauert, M., Hatt, J., Schaepman-Strub, G., Ozgul A., Bunbury N., Clauss M., Hansen, D. M. (2018). Ecology and Evolution. doi:10.1002/ece3.3766
23. “In silico analysis of Pax6 protein glycosylation in vertebrates.” Uslupehlivan, M., Şener, E., & Deveci, R. (2018). Computational Biology and Chemistry, 77, 116-122. doi:10.1016/j.compbiolchem.2018.09.016
22. “In silico investigation of the prion protein glycosylation profiles in relation to scrapie disease resistance in domestic sheep (Ovis aries).” Uslupehlivan, M., Deveci, R., & Ün, C. (2018). Molecular and Cellular Probes,42, 1-9. doi:10.1016/j.mcp.2018.09.004
21. “Two-sided unobservable investment, bargaining, and efficiency.” Akçay, E., Meirowitz, A., & Ramsay, K. W. (2018). Review of Economic Design, 22(3-4), 123-147. doi:10.1007/s10058-018-0213-4
20. “Gene-Culture Coinheritance of a Behavioral Trait.” Aguilar, E. G., & Akçay, E. (2018). The American Naturalist, 192(3), 311-320. doi:10.1086/698872
19. “Learning to Cooperate: The Evolution of Social Rewards in Repeated Interactions.” Dridi, S., & Akçay, E. (2018). The American Naturalist, 191(1), 58-73. doi:10.1086/694822
18. “Two major clades of blind mole rats (Nannospalax sp.) revealed by mtDNA and microsatellite genotyping in Western and Central Turkey.” Matur, F., Yanchukov, A., Çolak, F., & Sözen, M. (2018). Mammalian Biology. doi:10.1016/j.mambio.2018.11.004
17. “Cyanobacteria dominance drives zooplankton functional dispersion.” Josué, I. I., Cardoso, S. J., Miranda, M., Mucci, M., Ger, K. A., Roland, F., & Marinho, M. M. (2018). Hydrobiologia. doi:10.1002/lno.10946
16. “Selective Grazing by a Tropical Copepod (Notodiaptomus iheringi) Facilitates Microcystis Dominance.” Leitão, E., Ger, K. A., & Panosso, R. (2018). Frontiers in Microbiology, 9. doi:10.3389/fmicb.2018.00301
15. “In situ ingestion of Microcystis is negatively related to copepod abundance in the upper San Francisco Estuary.” Ger, K. A., Otten, T. G., DuMais, R., Ignoffo, T., & Kimmerer, W. (2018). Limnology and Oceanography, 63(6), 2394-2410. doi.org/10.1002/lno.10946
14. “The effect of social context on measures of boldness: Zebra finches (Taeniopygia guttata) are bolder when housed individually.” Kerman, K., Miller, L., & Sewall, K. (2018). Behavioural processes, 157, 18-23. doi.org/10.1016/j.beproc.2018.08.007
13. “Social conformity affects experimental measurement of boldness in male but not female monk parakeets (Myiopsitta monachus).” Kerman, K., Sieving, K. E., Mary, C. S., & Avery, M. L. (2018). Behaviour, 155(13-15), 1025-1050. doi.org/10.1163/1568539X-00003519
12. “Population genetics of the main population of brown bears in southwest Asia.” Ambarlı, H., Mengüllüoğlu, D., Fickel, J., & Förster, D. W. (2018). doi.org/10.7717/peerj.5660
11. “Foraging ecology of Eurasian lynx populations in southwest Asia: Conservation implications for a diet specialist.” Mengüllüoğlu, D., Ambarlı, H., Berger, A., & Hofer, H. (2018). Ecology and evolution, 8(18), 9451-9463. doi.org/10.1002/ece3.4439
10. “Male parental investment reflects the level of partner contributions and brood value in tree swallows.” Lendvai, A. Z., Akçay, Ç., Stanback, M., Haussmann, M. F., Moore, I. T., & Bonier, F. (2018). Behavioral Ecology and Sociobiology, 72(12), 185. doi.org/10.1007/s00265-018-2594-3
9. “Population genomic data reveal extreme geographic subdivision and novel conservation actions for the declining foothill yellow-legged frog.” McCartney-Melstad, E., Gidiş, M., & Shaffer, H. B. (2018). Heredity, 121(2), 112-125. doi.org/10.1038/s41437-018-0097-7
8. “Genetic and environmental variation in transcriptional expression of seminal fluid proteins.” Patlar, B., Weber, M., & Ramm, S. A. (2018). Heredity, 1. doi.org/10.1038/s41437-018-0160-4
7. “Modeling the effects of climatic and land use changes on phytoplankton and water quality of the largest Turkish freshwater lake: Lake Beyşehir.” Bucak, T., Trolle, D., Tavşanoğlu, Ü. N., Çakıroğlu, A. İ., Özen, A., Jeppesen, E., & Beklioğlu, M. (2018). Science of the Total Environment, 621, 802-816. doi:10.1016/j.scitotenv.2017.11.258
6. “Archaeogenetics of Late Iron Age Çemialo Sırtı, Batman: Investigating maternal genetic continuity in north Mesopotamia since the Neolithic.” Yaka, R., Birand A., Yılmaz Y., Caner C., Açan S.C., Gündüzalp S., Parvizi P., Özdoğan A.E, Togan I, and Somel M. (2018) American journal of physical anthropology.
5. “Investigating Holocene human population history in North Asia using ancient mitogenomes” Kılınç, G.M., Kashuba, N., Yaka, R., Sümer, A.P., Yüncü, E., Shergin, D., Ivanov, G.L., Kichigin, D., Pestereva, K., Volkov, D. and Mandryka, P., (2018) . Scientific reports, 8(1), p.8969. doi:10.1038/s41598-018-27325-0
4. “Genomic and Strontium Isotope Variation Reveal Immigration Patterns in a Viking Age Town.” Krzewińska, M., Kjellström, A., Günther, T., Hedenstierna-Jonson, C., Zachrisson, T., Omrak, A., Yaka, R., Kılınç, G.M., Somel, M., Sobrado, V. and Evans, J., (2018) Current Biology 28, no. 17 (2018): 2730-2738. doi:10.1016/j.cub.2018.06.053
3. “A functional trait database for Mediterranean Basin plants.” Tavşanoğlu, Ç., & Pausas, J. G. (2018). Scientific data, 5, 180135.
2. “Effect of fire-derived chemicals on germination and seedling growth in Mediterranean plant species.” Çatav, Ş. S., Küçükakyüz, K., Tavşanoğlu, Ç., & Pausas, J. G. (2018). Basic and Applied Ecology.
1. “The rise and fall of the Old World savannah fauna and the origins of the African savannah biome.” Kaya F, Bibi F, Zliobaite I, Eronen JT, Hui T, Fortelius M (2018). Nature Ecology and Evolution. doi:10.1038/s41559-017-0414-1
2017
34. 4. “Sexual and non-sexual social preferences in male and female white-eyed bulbuls.” Kabasakal, B., Poláček, M., Aslan, A., Hoi, H., Erdoğan, A., & Griggio, M. (2017). Scientific reports, 7(1), 5847.
33. “Patterns of Circulating Corticosterone in a Population of Rattlesnakes Afflicted with Snake Fungal Disease: Stress Hormones as a Potential Mediator of Seasonal Cycles in Disease Severity and Outcomes.” Lind, C., Moore, I. T., Akçay, Ç., Vernasco, B. J., Lorch, J. M., & Farrell, T. M. (2018). Physiological and Biochemical Zoology. doi:10.1086/695747
32. “Ecological niche modelling of pedunculate oak (Quercus robur) supports the ‘expansion–contraction’ model of Pleistocene biogeography”. Ülker, E. D., Tavşanoğlu, Ç., & Perktaş, U. (2017). Biological Journal of the Linnean Society. doi:10.1093/biolinnean/blx154
31. “Learning to Cooperate: The Evolution of Social Rewards in Repeated Interactions.” Dridi S, Akçay E (2017). American Naturalist. doi: 10.1086/694822
30. “Cell lineage and cell cycling analyses of the 4rd micromere using live imaging in the marine annelid Platynereis dumerilii.” Özpolat BD, Handberg-Thorsager M, Vervoort M, Balavoine G (2017). eLife. doi: 10.7554/eLife.30463
29. “Archaeogenomic analysis of the first steps of Neolithization in Anatolia and the Aegean.” , , , , , , , , , , , , ,
28. “Modelling the drivers of natural fire activity: the bias created by cropland fires.” Bekar I, Tavsanoglu C (2017). International Journal of Wildland Fire. doi: 10.1071/WF16183
27. “Constraining the timing of the Great Oxidation Event within the Rubisco phylogenetic tree.” Kacar B, Hanson-Smith V, Adam ZR & Boekelheide N (2017) Geobiology. doi:10.1111/gbi.12243. (see also: 1, 2)
26. “Estimation of Individual Growth Trajectories When Repeated Measures Are Missing.” Brooks ME, Clements C, Pemberton J & Ozgul A (2017). The American Naturalist. doi:10.1086/692797.
25. “Gene expression reversal toward pre-adult levels in the aging human brain and age-related loss of cellular identity.” Donertas HM, Izgi H, Kamacioglu A, He Z, Khaitovich P & Somel M (2017). Scientific Reports doi:10.1038/s41598-017-05927-4.
24. “Archaic hominin introgression in Africa contributes to functional salivary MUC7 genetic variation.” Xu D, Pavlidis P, Taskent RO, Alachiotis N, Flanagan C, DeGiorgio M, Blekhman R, Ruhl S & Gokcumen O (2017). Molecular Biology and Evolution. doi:10.1093/molbev/msx206.
23. “Conservation genomics of the endangered Burmese roofed turtle.” Cilingir FG, Rheindt FE, Garg KM, Platt K, Platt SG & Bickford DP (2017). Conservation Biology. doi:10.1111/cobi.12921.
22. “Modeling Adaptive and Nonadaptive Responses of Populations to Environmental Change.” Coulson T, Kendall BE, Barthold J, Plard F, Schindler S, Ozgul A & Gaillard J-M The American Naturalist. doi:10.1086/692542.
21. “Y Chromosome Uncovers the Recent Oriental Origin of Modern Stallions.” Wallner B, Palmieri N, Vogl C, Rigler D, Bozlak E, Druml T, Jagannathan V, Leeb T, Fries R, Tetens J, Thaller G, Metzger J, Distl O, Lindgren G, Rubin CJ, Andersson L, Schaefer R, McCue M, Neuditschko M, Rieder S, Schlotterer C & Brem G (2017). Current Biology. doi:10.1016/j.cub.2017.05.086.
20. “Good tutors are not dear enemies in song sparrows.” Akçay Ç, Campbell SE & Beecher MD (2017). Animal Behaviour. doi:10.1016/j.anbehav.2017.05.026.
19. “Body size shifts and early warning signals precede the historic collapse of whale stocks.” Clements CF, Blanchard JL, Nash KL, Hindell MA & Ozgul A (2017). Nature Ecology & Evolution. doi:10.1038/s41559-017-0188. (see also: 1, 2)
18. “Evolutionary determinants of polycystic ovary syndrome: part 1.” Unluturk U, Sezgin E & Yildiz BO (2016). Fertility and Sterility. doi:10.1016/j.fertnstert.2016.05.010.
17. “Evidence of potential hybridization in the Thaumetopoea pityocampa-wilkinsoni
complex.” Petrucco-Toffolo E, Basso A, Kerdelhué C, İpekdal K, Mendel Z, Simonato M & Battisti A (2017). Agricultural and Forest Entomology. doi:10.1111/afe.12224.
16. “Modeling the distribution of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann, 1824) (Diptera, Tephritidae) in Turkey and its range expansion in Black Sea Region.” Kaya T, Ada E & İpekdal K (2017). Turkish Journal of Entomology. doi:10.16970/ted.28388.
15. “Isolation by distance and isolation by environment contribute to population differentiation in Protea repens (Proteaceae L.), a widespread South African species.” Prunier R, Akman M, Kremer CT, Aitken N, Chuah A, Borevitz J & Holsinger KE (2017). American Journal of Botany. doi:10.3732/ajb.1600232.
14. “Sexual selection reinforces a higher flight endurance in urban damselflies.” Tüzün N, Op de Beeck L & Stoks R (2017). Evolutionary Applications. doi:10.1111/eva.12485.
13. “Inter-population variability in seed dormancy, seed mass and germination in Helianthemum salicifolium (Cistaceae), a hard-seeded annual herb.” Yeşilyurt EB, Erik S & Tavşanoğlu Ç (2017). Folia Geobotanica. doi:10.1007/s12224-017-9290-3.
12. “Fathers matter: male body mass affects life-history traits in a size-dimorphic seabird.” Cornioley T, Jenouvrier S, Borger L, Weimerskirch H & Ozgul A (2017). Proceedings of the Royal Society B: Biological Sciences. doi:10.1098/rspb.2017.0397. (see also: 1)
11. “Employing DNA barcoding as taxonomy and conservation tools for fish species censuses at the southeastern Mediterranean, a hot-spot area for biological invasion”. Karahan A., Douek J., Paz G., Stern N., Kideys A.E., Shaish L., Goren M., Rinkevich B. (2017). Journal for Nature Conservation. doi.org/10.1016/j.jnc.2017.01.004.
10. “Population structure reduces benefits from partner choice in mutualistic symbiosis.” Akcay E (2017). Proceedings of the Royal Society B: Biological Sciences. doi:10.1098/rspb.2016.2317.
9. “Role of predation in biological communities in naturally eutrophic sub-Arctic Lake Mývatn, Iceland.” Cañedo-Argüelles M, Sgarzi S, Arranz I, Quintana XD, Ersoy Z, Landkildehus F, Lauridsen TL, Jeppesen E & Brucet S (2016). Hydrobiologia. doi:10.1007/s10750-016-3031-0. (see also: 1)
8. “Combining human acceptance and habitat suitability in a unified socio-ecological suitability model: a case study of the wolf in Switzerland.” Behr DM, Ozgul A & Cozzi G (2017). Journal of Applied Ecology. doi:10.1111/1365-2664.12880. (ayr. bkz.: 1, see also: 2, 3)
7. “A global analysis of traits predicting species sensitivity to habitat fragmentation.” Keinath DA, Doak DF, Hodges KE, Prugh LR, Fagan W, Sekercioglu CH, Buchart SHM & Kauffman M (2017). Global Ecology and Biogeography. doi:10.1111/geb.12509.
6. “Life-history responses to environmental change revealed by resurrected rotifers from a historically polluted lake.” Zweerus NL, Sommer S; Fontaneto D, Ozgul A (2017). Hydrobiologia. doi:10.1007/s10750-016-3070-6.
5. “Trait–demography relationships underlying small mammal population fluctuations.” van Benthem KJ, Hannah F, Coulson T, Getz LL, Oli MK, Ozgul A (2017). Journal of Animal Ecology. doi:10.1111/1365-2656.12627.
4. “Are generic early-warning signals reliable indicators of population collapse in rotifers?” Sommer S, van Benthem KJ, Fontaneto D, Ozgul A (2017). Hydrobiologia. doi:10.1007/s10750-016-2948-7.
3. “Disentangling evolutionary, plastic and demographic processes underlying trait dynamics: A review of four frame works.” van Benthem KJ, Bruijning M, Bonnet T, Jongejans E, Postma E, Ozgul A (2017). Methods in Ecology and Evolution. doi:10.1111/2041-210X.12627.
2. “Future water availability in the largest freshwater Mediterranean lake is at great risk as evidenced from simulations with the SWAT model” (2017). Bucak T, Trolle D, Andersen HE, Thodsen H, Erdoğan Ş, Levi EE, Filiz N, Jeppesen E, Beklioğlu M. (2017) Science of the Total Environment. doi: http://dx.doi.org/10.1016/j.scitotenv.2016.12.149 (see also: 1)
1. “Multiple fire-related cues stimulate germination in Chaenorhinum rubrifolium (Plantaginaceae), a rare annual in the Mediterranean Basin”. Tavşanoğlu Ç, Ergan G, Çatav ŞS, Zare G, Küçükakyüz K, Özüdoğru B (2017). Seed Science Research. doi: 10.1017/S0960258516000283. (see also: 1)
2016
72. “Rural and Urban Students’ Perceptions of and Attitudes toward Brown Bears in Turkey.” Ambarlı H (2016). Anthrozoös. doi:10.1080/08927936.2016.1181384.
71. “Age-based discrimination of rival males in western bluebirds.” Akcay C, Arnold JA, Hambury KL & Dickinson JL (2016). Animal Cognition. doi:10.1007/s10071-016-1004-3.
70. “Strategic adjustment of parental care in tree swallows: life-history trade-offs and the role of glucocorticoids.” Akcay C, Lendvai AZ, Stanback M, Haussmann M, Moore IT & Bonier F (2016). Royal Society Open Science. doi:10.1098/rsos.160740.
69. “The sparrow and the hawk: aggressive signaling under risk of predation.” Akçay Ç, Clay A, Campbell SE & Beecher MD (2016). Behavioral Ecology. doi:10.1093/beheco/arv196.
68. “Fish assemblage and diversity in lakes of western and central Turkey: role of geo-climatic and other environmental variables”. Boll T, Levi EE, Bezirci G, Özuluğ M, Tavşanoğlu ÜN, Çakıroğlu Aİ, Özcan S, Brucet S, Jeppesen E, Beklioğlu M (2016). Hydrobiologia. doi: 10.1007/s10750-015-2608-3.
67. Multi-proxy palaeoecological responses to water-level fluctuations in three shallow Turkish lakes. Levi EE, Bezirci G, Çakıroğlu Aİ, Turner S, Bennion H, Kernan M, Jeppesen E, Beklioğlu M (2016). Palaeogeography, Palaeoclimatology, Palaeoecology. doi: 10.1016/j.palaeo.2016.02.052.
66. Food web effects of titanium dioxide nanoparticles in an outdoor freshwater mesocosm experiment. Jovanović B, Bezirci G, Çağan AS, Coppens J, Levi EE, Oluz Z, Tucel E, Duran H, Beklioğlu M (2016).Nanotoxicology. doi: 10.3109/17435390.2016.1140242.
65. The influence of nutrient loading, climate and water depth on nitrogen and phosphorus loss in shallow lakes: a pan-European mesocosm experiment. Coppens J, Hejzlar J, Šorf M, Jeppesen E, Erdoğan Ş, Scharfenberger U, Mahdy A, Nõges P, Tuvikene A, Baho DL, Papastergiadou E, Stefanidis K, Olsen S, Trigal C, Beklioğlu M (2016). Hydrobiologia. doi: 10.1007/s10750-015-2505-9.
64. Inferring past environmental changes in three Turkish lakes from sub-fossil Cladocera. Çakıroğlu Aİ, Levi EE, Tavşanoğlu ÜN, Bezirci G, Erdoğan Ş, Filiz N, Andersen TJ, Davidson TA, Jeppsen E, Beklioğlu M (2016). Hydrobiologia doi: 10.1007/s10750-015-2581-x.
63. Impact of alternating wet and dry periods on long-term seasonal phosphorus and nitrogen budgets of two shallow Mediterranean lakes. Coppens J, Özen A, Tavşanoğlu ÜN, Erdoğan Ş, Levi EE, Yozgatlıgil C, Jeppesen E & Beklioğlu M (2016). Science of the Total Environment. doi: 10.1016/j.scitotenv.2016.04.028.
62. “Preface: Shallow lakes in a fast changing world.” Beklioğlu M, Meerhoff M, Davidson TA, Ger KA, Havens K & Moss B (2016). Hydrobiologia. doi:10.1007/s10750-016-2840-5.
61. “Genomic and physiological analyses of ‘Reinekea forsetii’ reveal a versatile opportunistic lifestyle during spring algae blooms” Avcı, B., Hahnke, R. L., Chafee, M., Fischer, T., Gruber-Vodicka, H., Tegetmeyer, H. E., Harder, J., Fuchs, B. M., Amann, R. I. and Teeling, H. (2016). Environmental Microbiology doi:10.1111/1462-2920.13646.
60. “Multi-Phase US Spread and Habitat Switching of a Post-Columbian Invasive, Sorghum halepense.” Sezen UU, Barney JN, Atwater DZ, Pederson GA, Pederson JF, Chandler JM, Cox TS, Cox S, Dotray P, Kopec D, Smith SE, Schroeder J, Wright SD, Jiao Y, Kong W, Goff V, Auckland S, Rainville LK, Pierce GJ, Lemke C, Compton R, Phillips C, Kerr A, Mettler M & Paterson AH (2016). PLoS One. doi:10.1371/journal.pone.0164584.
(ayr. bkz: 1, see also: 2)
59. “Sequence of the Sugar Pine Megagenome.” Stevens KA, Wegrzyn JL, Zimin A, Puiu D, Crepeau M, Cardeno C, Paul R, Gonzalez-Ibeas D, Koriabine M, Holtz-Morris AE, Martinez-Garcia PJ, Sezen UU, Marcais G, Jermstad K, McGuire PE, Loopstra CA, Davis JM, Eckert A, de Jong P, Yorke JA, Salzberg SL, Neale DB & Langley CH (2016). Genetics. doi:10.1534/genetics.116.193227. (see also: 1, 2, 3)
58. “Rate of forcing and the forecastability of critical transitions.” Clements CF, Ozgul A (2016). Ecology and Evolution. doi:10.1002/ece3.2531.
57. “Differential plasticity of structural size and mass in a hibernating mammal to environmental change.” Canale CI, Ozgul A, Allaine D, Cohas A (2016). Global Change Biology. doi:10.1111/gcb.13286.
56. “Demographic cost and mechanisms of adaptation to environmental stress in resurrected Daphnia.” Sommer S, Piscia R, Manca M, Fontaneto D, Ozgul A (2016). Journal of Limnology. doi:10.4081/jlimnol.2016.1292.
55. “How well can body size represent effects of the environment on demographic rates? Disentangling correlated explanatory variables.” Brooks ME, Mugabo M, Rodgers GM, Benton TG, Ozgul A (2016). Journal of Animal Ecology. doi:10.1111/1365-2656.12465.
54. “Conservation of ecosystem services does not secure the conservation of birds in a Peruvian shade coffee landscape.” Aerts RAF, Spranghers S & Şekercioğlu ÇH (2016). Bird Conservation International. doi:10.1017/S0959270916000149.
53. “A global analysis of the determinants of alien geographical range size in birds.” Dyer EE, Franks V, Cassey P, Collen B, Cope RC, Jones KE, Şekercioğlu ÇH & Blackburn TM (2016). Global Ecology and Biogeography. doi:10.1111/geb.12496.
52. “Geolocator tracking of Great Reed-Warblers (Acrocephalus arundinaceus) identifies key regions for migratory wetland specialists in the Middle East and sub-Saharan East Africa.” Horns JJ, Buechley E, Chynoweth M, Aktay L, Çoban E, Kırpık MA, Herman JM, Şaşmaz Y & Şekercioğlu ÇH (2016). The Condor. doi:10.1650/CONDOR-16-63.1. (ayr. bkz: 1, see also: 2)
51. “Atopic dermatitis susceptibility variants in filaggrin hitchhike hornerin selective sweep.” Eaaswarkhanth M, Xu D, Flanagan C, Rzhetskaya M, Hayes MG, Blekhman R, Jablonski NG & Gokcumen O (2016). Genome Biol Evol. doi:10.1093/gbe/evw242.
50. “The psoriasis-associated deletion of late cornified envelope genes LCE3B and LCE3C has been maintained under balancing selection since Human Denisovan divergence.” Pajic P, Lin YL, Xu D & Gokcumen O (2016). BMC Evolutionary Biology. doi:10.1186/s12862-016-0842-6.
49. “Role of predation in biological communities in naturally eutrophic sub-Arctic Lake Mývatn, Iceland.” Cañedo-Argüelles M, Sgarzi S, Arranz I, Quintana X D, Ersoy Z, Landkildehus F, Lauridsen TL, Jeppesen E & Brucet S (2016). Hydrobiologia. doi:10.1007/s10750-016-3031-0.
48. “Disruption of an Evolutionarily Novel Synaptic Expression Pattern in Autism.” Liu X, Han D, Somel M, Jiang X, Hu H, Guijarro P, Zhang N, Mitchell A, Halene T, Ely JJ, Sherwood CC, Hof PR, Qiu Z, Pääbo S, Akbarian S, Khaitovich P (2016) PLoS Biology, doi:10.1371/journal.pbio.1002558.
47. “Plasticity and regeneration of gonads in the annelid Pristina leidyi.” Özpolat BD, Sloane E, Zattara EE, Bely AE (2016). EvoDevo, doi:10.1186/s13227-016-0059-1.
46. “Long-term trends and temporal synchrony in lake plankton richness, diversity and biomass driven by re-oligotrophication and climate across 17 Danish Lakes.” Özkan K, Jeppsesen E, Bjerring RB, Johansson LS, Davidson TA, Søndergaard M, Lauridsen TL, Svenning JC (2016). Water, doi:10.3390/w8100427.
45. “Flegontov P, Changmai P, Zidkova A, Logacheva MD, Altınışık NE, Flegontova O, .. & Neretina T (2016). Genomic study of the Ket: a Paleo-Eskimo-related ethnic group with significant ancient North Eurasian ancestry.” Scientific Reports, doi:10.1038/srep20768.
44. “Insulin signalling mediates the response to male-induced harm in female Drosophila melanogaster.” Sepil I, Carazo P, Perry JC & Wigby S (2016). Scientific Reports, doi:10.1038/srep30205.
43. “Inbreeding removes sex differences in lifespan in a population of Drosophila melanogaster.” Carazo P, Green J, Sepil I, Pizzari T & Wigby S (2016). Biology Letters, doi:10.1098/rsbl.2016.0337.
42. “From population genomics to conservation and management: a workflow for targeted analysis of markers identified using genome-wide approaches in Atlantic salmon Salmo salar.” Aykanat T, Lindqvist M, Pritchard VL & Primmer CR (2016). Journal of Fish Biology. doi:10.1111/jfb.13149.
41. “Developmental and molecular biology of annelid regeneration: a comparative review of recent studies.” Ozpolat BD & Bely AE (2016). Current Opinion in Genetics & Development. doi:10.1016/j.gde.2016.07.010.
40. “The Anatolian diagonal revisited: Testing the ecological basis of a biogeographic boundary.” Gür H (2016). Zoology in the Middle East. doi:10.1080/09397140.2016.1226544.
39. “Recent evolution of the salivary mucin MUC7.” Xu D, Pavlidis P, Thamadilok S, Redwood E, Fox S, Blekhman R, Ruhl S & Gokcumen O (2016). Scientific Reports. doi:10.1038/srep31791.
38. “Exceptional maternal lineage diversity in brown bears (Ursus arctos) from Turkey.” Çilingir FG, Akın Pekşen Ç, Ambarlı H, Beerli P & Bilgin CC (2016). Zoological Journal of the Linnean Society. doi:10.1111/zoj.12322.
37. “Measuring the impact of the pet trade on indonesian birds.” Harris JBC, Tingley MW, Hua F, Yong DL, Adeney JM, Lee TM, Marthy W, Prawiradilaga DM, Sekercioglu CH, Suyadi, Winarni N & Wilcove DS (2016). Conservation Biology. doi:10.1111/cobi.12729.
İnsanlık tarihinde ilk kez, günümüzden yaklaşık 11.000 yıl önce yeni bir yaşam tarzı Yakın Doğu’da gelişmeye başladı. İnsanlar geleneksel avcı-toplayıcı kültürünü zamanla terkederek yerleşik hayata geçtiler, tarım ve hayvancılığa başladılar. Bu geçiş sürecinin dinamiklerine antik DNA analizleri ışık tutabiliyor. Bu çalışmada orta Anadolu’nun ilk Taş Devri (Neolitik) çiftçi toplumlarından olan Konya Boncuklu Höyük insanlarının, ayrıca Boncuklu’dan 1000 sene sonra yaşamış Niğde Tepecik-Çiftlik Höyük’ün çiftçilerinin genomları incelendi. İlk çiftçilerin genetik çeşitliliklerinin düşük olduğu, bu açıdan ataları olan avcı-toplayıcılara benzedikleri bulundu. Ama zaman içinde çiftçi toplumların çeşitliliği artmış. Bu da nüfusun zamanla büyüdüğüne ve hareketlenmenin arttığına işaret ediyor. (Fotoğraf: Tepecik-Çiftlik’te bulunan bir kolektif gömü (kaynak: haber.sol.org.tr). Grafik: Tepecik ve Boncuklu’nun diğer tarihsel ve güncel topluluklara göre genetik konumu)
.
35. “Vultures.” Buechley ER & Sekercioglu CH (2016). Current Biology. doi:10.1016/j.cub.2016.01.052.
34. “The avian scavenger crisis: Looming extinctions, trophic cascades, and loss of critical ecosystem functions.” Buechley ER & Şekercioğlu ÇH (2016). Biological Conservation. doi:10.1016/j.biocon.2016.04.001.
33. “The Rate and Spectrum of Spontaneous Mutations in Mycobacterium smegmatis, a Bacterium Naturally Devoid of the Postreplicative Mismatch Repair Pathway.” Kucukyildirim S, Long H, Sung W, Miller SF, Doak TG, Lynch M (2016). G3 (Bathesda). doi: 10.1534/g3.116.030130.
32. “Conservation of a new breeding population of Caucasian lynx(Lynx lynx dinniki) in eastern Turkey.” Chynoweth MW, Çoban E & Şekercioğlu ÇH (2015). Turkish Journal of Zoology. doi:10.3906/zoo-1405-10.
31. “Updating the Europe–Africa small mammal exchange during the late Messinian.” Garcia-Alix A., Minver-Barakat R., Martin-Suarez E., Freudenthal M., Aguirre J., Kaya F. (2016) Journal of Biogeography. doi: 10.1111/jbi.12732.
30. “Magnetostratigraphy and paleoecology of the hominid-bearing locality Corakyerler, Tuğlu Formation (Çankiri Basin, Central Anatolia).” Kaya F., Kaymakci, N., Bibi F., Eronen JT., Pehlevan C., Erkman AC., Langeris C., Fortelius M. (2016). Journal of Vertebrate Paleontology. doi: 10.1080/02724634.2015.1071710.
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28. “Omnivory in birds is a macroevolutionary sink.” Burin G, Kissling WD, Guimaraes PR, Jr., Sekercioglu CH & Quental TB (2016). Nature Communications. doi:10.1038/ncomms11250
27. “Potential mechanisms for the tropical copepod Notodiaptomusto tolerate Microcystistoxicity.” Ger KA, Leitao E & Panosso R (2016). Journal of Plankton Research. doi:10.1093/plankt/fbw036.
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DNA barkodlama, türlerin genetik olarak başka türlerden ayrılmasına olanak sağlar. bu çalışmada, incelenen 33 kuş türünün 26’sından daha önce görülmemiş yeni genetik barkodlar elde edildi. 12 kuş türünde ise bilim dünyasına yeni 18 genetik haplotip keşfedildi. Yapılan çalışma ile elde edilen DNA barkod verilerini dünyanın farklı bölgelerinden elde edilmiş olan veriler ile karşılaştırıldığında, Türkiye’deki kuşların genetik olarak Doğu Avrupa, Batı Rusya, Orta Asya bölgesinde yaşayan kuşlara daha fazla benzediği görüldü. İncelenen 33 kuş türünün yüzde 79’unda yeni genetik barkodlar keşfedilmesi, Aras Nehri Kuş Cennetinin biyolojik ve genetik çeşitlilik açısından dünya çapındaki önemini bir kez daha gösterdi. Burada, halen genetik olarak incelenmemiş 230’dan fazla kuş türü var. Çalışmalar devam ederse, yüzlerce yeni genetik barkod ve belki de yeni kuş türleri keşfedilebilir. (Fotoğraf: Aras Nehri vadisi kus cenneti. Kaynak: http://haberler.boun.edu.tr/)
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22. “Circum-Mediterranean phylogeography of a bat coupled with past environmental niche modeling: A new paradigm for the recolonization of Europe?” Bilgin R, Gurun K, Rebelo H, Puechmaille SJ, Maraci O et al. (2016). Molecular Phylogenetics and Evolution. doi:10.1016/j.ympev.2016.03.024.
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8. “Evaluation of boldness assays and associated behavioral measures in a social parrot, monk parakeet (Myiopsitta monachus).” Kerman K, Mary Colette S, Avery Michael L & Sieving Kathryn E (2016). Behaviour. doi.
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Türkiye birçok büyük memeli etçil türüne ait popülasyonlar barındırır. Bu popülasyonların sağlıklı biçimde korunması (örn. insan-yaban hayatı çatışmasının ve diğer tehdit unsurlarının en aza indirilmesi) ancak sistematik izleme faaliyetleri ve öngörülen önlemlerin değişen risk unsurlarına bağlı güncellenmesiyle mümkündür. Bu bağlamda Huseyin Ambarlı ve arkadaşları Türkiye’nin önemli etçillerinden bozayı (Ursus arctos), kurt (Canis lupus), çakal (Canis aureus) ve kızıl tilki (Vulpes vulpes) için, türlerin biyo-ekolojik özelliklerini ( aktivite, diyet vb.) ve dağılım haritalarını derledikleri geniş kaynaklı bir veri tabanı hazırladılar. Araştırmacılar bu bilgileri kullanarak türlerin IUCN (Nesli Tükenme Tehlikesi Altında Olan Türlerin Kırmızı Listesi) statülerini belirleyip bu konudaki güncel durumu ortaya koymuşlardır.
(Harita: Türkiye’de bozayının dağılımı. Fotoğraf: Fotokapanla görüntülenen bir bozayı.)
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5. “The interaction between cyanobacteria and zooplankton in a more eutrophic world. Harmful Algae”, Ger KA, Urrutia-Cordero P, Frost PC, Hansson L-A, Sarnelle O, Wilson AE, Lürling M (2016) Harmful Algae doi:10.1016/j.hal.2015.12.005.
4. “High-resolution modelling closes the gap between data and model simulations for Mid-Holocene and present-day biomes of East Africa”, Fer I, Tietjen B, Jeltsch F (2016) Palaeogeography, Palaeoclimatology, Palaeoecology doi:10.1016/j.palaeo.2015.12.001.
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1. “Determining the origin of synchronous multifocal bladder cancer by exome sequencing.” Acar Ö, Özkurt E, Demir G, Saraç H, Alkan C, Esen T, Somel M & Lack NA (2015). BMC Cancer. doi:10.1186/s12885-015-1859-8..
